Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242294g00004 ATGCCTCCATCAACTTATTCCATCGATGAAAAAACAACCTTAAACCAAACTACACATATCTTCAAATCAAAATTACCAGACATACCCATCAACAATACCGTTCCTCTCCACACTTATTGCTTTCAAAAGCTCCCCCAAATATCCCACCGCCCATGTCTCATCACGAGCAGTGGCAAGACATACACCTATGGTGATACCCACCGCGCTTCTAGAAACTTCGCCATGGGCCTCTTCAACCTTGGAATCCGAAAAGGTGACGTCATCATGATTTTACTCCCAAACTCTCCGGAATTTGTGTTCTCCTTTTGGGCTGCTTCTATGCTTGGCGCAGTTTCCACCCCCGCCAACCCTTCTTACACCTCTTCTGAAATCATGAAGCAGCTCAAAGCCTCCAAGGCCATAATCGTCATTACACATGCCATGCACGTGCACAAGCTCAAACAAGAAGAAGAAAACACCTTCACGGTGATAACCGTAGACAATCCTCCAGAGAATTGCATGAGTTTCTCGGAGATTTCCAGCATGGAAGGGAAGCTGCCGGAGGTGGATATTGCCCCCGACGACATGGTGACACTTCCATTCTCCTCCGGCACGACGGGGTTGCCTAAGGGTGTGATTCTAACACACAGGAGTCTAATAACAAATGTGGCTCAGGTGCTTGATGGAAAGAACCCTAACTTGAATATGAAGGAAGAGGATGTAGTGCTTTGTGTCCTACCATTGTTTCACATTTACGCGTTGCACTGTGTGATGTTGTGCTCTATGAGAGTAGGGTGTACAATGTTGCTTAAGGAGAAGTTTGAGATGAGAGCCATGTTGGAGCTTGTGGAGAAGCACAGGGTTTCAGTTGTGATGGCAGTGCCGCCGTTGGTGGTGGCACTGTCAAAGAACCCCATAGCGGAGGAGTATGACCTTAGCTCCATCCGGATGGTGATGTCCGGAGGTGCTCCACTTAAAGCAAACTTCGAGGAGGCTTTTCATAGTAGGATGCCCAAAGCAATCTTTCGACAGGCTTTGGGGATGACTGAATCAGGGCCAGTGATAACTATGTCATTAGGGTTTGCAAAGTATCCGATGACATCTAAGTTAGAGTCATGTGGTACAGTCATTAGAAATGCAGAAATGAAGATTATTGATCCTTTAACAGGCTCTTCTCACTCTTATAATACCTTGAGTGAGATCTGCATTCGAGGTCAACAAATCATGAAAGGATACCTGAATGATGAGAAGGCCACAGCAGAAGCTATTGATGAAGAGGGTTGGCTTCATACTGGTGATATTGGCTATGTGGACAATGATGATGAGGTTTTCATTGTTGATAGACTCAAAGAAATCATCAAATTCAAAGGCTACCAGGTGGCTCCGGCAGAACTTGAAGGCCTTCTTATGAGTCATCCTTCCATTGAAGATGCAGCTGTTGTCCCGCAAAAAGATGATGTAGCTGGTGAAGTTCCAGTTGCTTTTGTGGTGAGGTCATCAAATAATGGTGATTTTGATCTTGTTACTGAAGATGCCGTAAAGGACTTTATAGCTAAACAGGTTGCGTTTTACAAGAGGCCACAGAGAATAATATTCATTGATAAAATTCCAAAGTCTGCAATTGGCAAGATATTAAGAAAAGAACTCAAAGCAAAGCTCCCTATCTACCAAGTCAACCCTGTCTAA 1665 0.4462 MPPSTYSIDEKTTLNQTTHIFKSKLPDIPINNTVPLHTYCFQKLPQISHRPCLITSSGKTYTYGDTHRASRNFAMGLFNLGIRKGDVIMILLPNSPEFVFSFWAASMLGAVSTPANPSYTSSEIMKQLKASKAIIVITHAMHVHKLKQEEENTFTVITVDNPPENCMSFSEISSMEGKLPEVDIAPDDMVTLPFSSGTTGLPKGVILTHRSLITNVAQVLDGKNPNLNMKEEDVVLCVLPLFHIYALHCVMLCSMRVGCTMLLKEKFEMRAMLELVEKHRVSVVMAVPPLVVALSKNPIAEEYDLSSIRMVMSGGAPLKANFEEAFHSRMPKAIFRQALGMTESGPVITMSLGFAKYPMTSKLESCGTVIRNAEMKIIDPLTGSSHSYNTLSEICIRGQQIMKGYLNDEKATAEAIDEEGWLHTGDIGYVDNDDEVFIVDRLKEIIKFKGYQVAPAELEGLLMSHPSIEDAAVVPQKDDVAGEVPVAFVVRSSNNGDFDLVTEDAVKDFIAKQVAFYKRPQRIIFIDKIPKSAIGKILRKELKAKLPIYQVNPV 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242294g00004 554 Gene3D - 443 547 IPR045851 -
Stsc242294g00004 554 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 544 - -
Stsc242294g00004 554 FunFam 4-coumarate--CoA ligase 2 444 547 - -
Stsc242294g00004 554 SUPERFAMILY Acetyl-CoA synthetase-like 33 545 - -
Stsc242294g00004 554 Gene3D - 11 442 IPR042099 -
Stsc242294g00004 554 Pfam AMP-binding enzyme 50 448 IPR000873 -
Stsc242294g00004 554 CDD 4CL 25 542 - -
Stsc242294g00004 554 FunFam Long-chain-fatty-acid--CoA ligase FadD 22 443 - -
Stsc242294g00004 554 Pfam AMP-binding enzyme C-terminal domain 457 536 IPR025110 -
Stsc242294g00004 554 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242294g00004 Stsc-Chr242294 25545 29226 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242294g00004 17 455 Monolignol Biosynthesis Gene Families AT1G65060 61.937 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242294g00004 K01904 - gmx:547492 692.96