Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242294g00003 ATGGCTAACAATGTCACTAACCGGTTCCATGAATCTCTCACTCGAAATGCTCTTCGCTCTTATCTCGCCGAATTCATGTCCACCTTCTTCTTTGTTCTTGTGGTTGTTGGTTCTGGAATGTCCGCACGGAAATTGATGCCTGATGCAACATTGAACCCGACTACTCTGGTTGTGGTTGCCATTGCAAACGCTTTCGCCTTGTCGTCGGTGTTGTACACCGCATGGGATATCTCCGGCGGACACGTCAACCCGGCGGTTACGTTTGCAATGGCAATAGGAGGCCATGTTAGTGTTCCAACCGCTCTCTTCTACTGGGTTGCCCAACTTATAGCCTCTGTTATGGCTTGCCTTGTCCTTAAGGTCATCGTTGTTGGAATGCATGTTCCAACATACACAATTGCTGAAGAGATGACAGGGTTTGGAGCATCGGTACTAGAAGGTCTCTTGACATTCGTGTTGGTCTACACAATCTATGCAGCAAGGGATCCAAGGCGTGGTCCATTGAGTGCCACAGGAACACTTGCAATTGGGCTCATGGCTGGTGCAAATGTGTTAGCCGCAGGTCCATTCTCAGGAGGCTCAATGAACCCTGCATGTGCCTTTGGCTCTGCTGCCATTGGTGGCAGTTTCAGGAACCAAGCCGTGTATTGGGTTGGACCATTGCTTGGTGCTGCTGTTGCTGGCCTTCTCTATGACAACGTAGTCTTCCCAATAACTGCAACTTCAGATCCAATTAGAGTAGGTTCTGATGGAATTGCCGTATAA 765 0.4902 MANNVTNRFHESLTRNALRSYLAEFMSTFFFVLVVVGSGMSARKLMPDATLNPTTLVVVAIANAFALSSVLYTAWDISGGHVNPAVTFAMAIGGHVSVPTALFYWVAQLIASVMACLVLKVIVVGMHVPTYTIAEEMTGFGASVLEGLLTFVLVYTIYAARDPRRGPLSATGTLAIGLMAGANVLAAGPFSGGSMNPACAFGSAAIGGSFRNQAVYWVGPLLGAAVAGLLYDNVVFPITATSDPIRVGSDGIAV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242294g00003 254 Gene3D Glycerol uptake facilitator protein. 3 242 IPR023271 -
Stsc242294g00003 254 PANTHER AQUAPORIN-8 9 236 IPR034294 -
Stsc242294g00003 254 SUPERFAMILY Aquaporin-like 9 238 IPR023271 -
Stsc242294g00003 254 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc242294g00003 254 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc242294g00003 254 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc242294g00003 254 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc242294g00003 254 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc242294g00003 254 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc242294g00003 254 FunFam Probable aquaporin TIP5-1 3 243 - -
Stsc242294g00003 254 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Stsc242294g00003 254 Pfam Major intrinsic protein 15 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242294g00003 Stsc-Chr242294 20539 21650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242294g00003 6 247 Major Intrinsic Protein MIP AT3G47440 65.587 6.04e-112 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242294g00003 K09873 - gmx:100801448 396.741