Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242294g00001 ATGCTCCTGAAGAATCTTCTAGAGAGTTGTGCTAAGTACATTGAATGCGGCAACATCTCAGCTGCAGATTCAGGATTAGCAAGAATTTCTCACCTTGCTTCCTCAGAAGGTGGTCCAATTGAAAGGCTATCAACTTATTTCAGTGAAGCACTCGCATCCCAACTTCTCAGTAGATCATACCATCATGGTGCTCGTGATGTTCTATCAAAACCAGTCTCAGCTTTAGAACACTCTCTTGCTAAGAGTTTGTTCTTTGAACTCTTTCCATTCCATAGGTTTTCTTATGCCGTTACGAATCAGGAAATCATTGATGCCATGATAGGCCTTCAAGGTATTCATATTCTTGATCTTAGTGAGCCATATGATGCTACTCAATGGATACTCTTTATGCAGAGTTTGAAAGACCACCGTTCTTCTTCTTCTTCTTCATCAACTAGGCCACCACAACTACCATATTTGAAGATTACTTGTGTTCATACAAATCAGGATGTGTTAGACCAAATGAGATTGCGTTTGACATTAGAAGCTGGCAAGTTGAATTTCCAATTCAAATTCCATGAGATTGTGAGCAGTTTGGAGAATTTGAACTTAGATAATTTGCCTATATGTAATGGAGAGCCTATGGCAATCAGCATTGTTCTTCAACTGCACCGTCTTTTAGCCACCGATGATCCACCAGTTTCAGTTCTTGTGCCCAACAACCATGTGATAATAATGAATCAAAGCCCTGATTCAGCACTGTCACTAGCAACTCATCATCGTTTCACTCAAAGCCCAATACCAAAGATGGAGTGCTTTCTGTACGGACTCTGGAAGCTCCAACCTAGAGTCATGGTCATGACGGAGCAAGAATCAAATGTCAACGGACGATCCTTGACGGATAGGGTTGAGAAAGGCTTGCATTTCTACGCAGCGTTGTTTGATTGCTTGCAAGATTCGGCCCCCATAAAGAGGATATTGGTTGAGAGGGGGATGTTAGGGGAGCAAATAAAGAACATAATTGCGTGTGAGGGAGGCCACAGAAAGGAAAGGTATGAGACGCTTAAGGCATGGATCCCTAGGCTTGAACTTGCTGGATTTCGTGGTGCTGAGATTGGCTTGGAAGGGATGTCAAGAGGCTTAATGGAGTTGCAGGATTATACACGTAATTATAGGGTTATTAGACATGATAGATCTTTGTTTGTGTGCTGGAATGATATTCCTCTCGTTTCTGTATCGGCTTGGAAATACTTGTGA 1236 0.4207 MLLKNLLESCAKYIECGNISAADSGLARISHLASSEGGPIERLSTYFSEALASQLLSRSYHHGARDVLSKPVSALEHSLAKSLFFELFPFHRFSYAVTNQEIIDAMIGLQGIHILDLSEPYDATQWILFMQSLKDHRSSSSSSSTRPPQLPYLKITCVHTNQDVLDQMRLRLTLEAGKLNFQFKFHEIVSSLENLNLDNLPICNGEPMAISIVLQLHRLLATDDPPVSVLVPNNHVIIMNQSPDSALSLATHHRFTQSPIPKMECFLYGLWKLQPRVMVMTEQESNVNGRSLTDRVEKGLHFYAALFDCLQDSAPIKRILVERGMLGEQIKNIIACEGGHRKERYETLKAWIPRLELAGFRGAEIGLEGMSRGLMELQDYTRNYRVIRHDRSLFVCWNDIPLVSVSAWKYL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242294g00001 411 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 405 IPR005202 -
Stsc242294g00001 411 Pfam GRAS domain family 3 409 IPR005202 -
Stsc242294g00001 411 ProSiteProfiles GRAS family profile. 1 409 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242294g00001 Stsc-Chr242294 9481 11669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242294g00001 1 409 GRAS Transcription Factor Family AT1G50420 35.374 2.53e-83 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc242294g00001 GRAS 9.7e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242294g00001 - - aip:107632524 587.03