LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc242293g00001	ATGGTGAGCATCAAATCTATCCACACGGTTATTCCTAGTGAAGCCACCCCAAATGGAACTTTCTTGCTCTCTCAGAGTCAGCAAATCAATGCTCACAATCATGCACTCACCATTTACATTTACAACGCAAATAATAACCTCAACAACAACATAATTGATACAATGAAACACTCTCTTGCCAAGATCTTAGTCCATTACTACCCACTAGCTGGCCGCATTCGCATGATCGAAGGCGGAAGAATGGAAGTTGATTGCAACAGAAATGGTGCATTGCTGTTGGAAGCTGAATCCACCAATACACTCCAAGACTACGGTGATTTCGAGCCCAACGCCGCCTTGCTGCGGCCGCTCCTCCCGGCGATTGATTACAGTGAACCAATGGAAAACCTGCCACTTGTTATGGTGCAGGTGACGAGATTTGCCTGCGGTGGAGTCTGTGTTGGGGTTACAAACTCCAATGTCGTTGCGGATGGAATCTCAGGCACTCTCTTCGTTGACGCTTGGGCTAAGCTTGCTCGAGGTGGCACTTTGGGAGAAGATGAGAAGCCATTGTTTCTTGATCAAATGGAGCTTCCAGTGATGATTGGTAGGTGTGATGCGAGTGAGGAGAGCAAGAAGGAGACGGATCTTGCAATTCTGAAGCTGACAAGGGAGATGGCGGAGAAGATTAAGAAGAAAGCCAATGATGATGGATGCTTCGAATTTGATCACGAGGAAGTTACGGCACAGAAGCACCGTCGTCCCTACAGTAGGTACGAAAGCATAGCTGCTCATATACGGAGGTGTGCATGCAAGGCACGCAATGCAGATCACAACCAACCCACGGTGGTCCTCACTGTCGCCGGTATCCGTAACAGGCTAAAGCCACCTCTTCCTCTTAACTACTTTGGGAACGCCACACACCCAACTGTGACACCCACATGCCTCAGTGGCGACATTGCTTCAAAGCCACTAAGATATGGTTCCCAGAAGATGAGAGAAGCCATCGAGTTGCTGACAGATGAGTACCTGAGATCAGCCTTCGAATTCATTGGGAGGCAGGACAATTTAGGGTGTCTCAGGCCAAAGTTGAACGGTGAATCAGGGTGTGTTGAAGCCCCATTTCTTGGGAACCTAAACCTCAACATTTGGAGTTGGATGAGTAATATGCCTACATATGGACCGGATTTTGGATGGGGAAGGCCGGTATACATGGGACCGTGTGAGGTTAAAGGAGATGGCAAGGCATTTATAATGCCTGCTCCCGGTGGAGATGGGAATCTTTCAGTTGCTATTCGGTTGCAGACTCCTCATGTTGAACCATTCGTCAAGTTCTTCTATCAGGACATATGA	1332	0.4812	MVSIKSIHTVIPSEATPNGTFLLSQSQQINAHNHALTIYIYNANNNLNNNIIDTMKHSLAKILVHYYPLAGRIRMIEGGRMEVDCNRNGALLLEAESTNTLQDYGDFEPNAALLRPLLPAIDYSEPMENLPLVMVQVTRFACGGVCVGVTNSNVVADGISGTLFVDAWAKLARGGTLGEDEKPLFLDQMELPVMIGRCDASEESKKETDLAILKLTREMAEKIKKKANDDGCFEFDHEEVTAQKHRRPYSRYESIAAHIRRCACKARNADHNQPTVVLTVAGIRNRLKPPLPLNYFGNATHPTVTPTCLSGDIASKPLRYGSQKMREAIELLTDEYLRSAFEFIGRQDNLGCLRPKLNGESGCVEAPFLGNLNLNIWSWMSNMPTYGPDFGWGRPVYMGPCEVKGDGKAFIMPAPGGDGNLSVAIRLQTPHVEPFVKFFYQDI	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc242293g00001	443	Gene3D	-	197	442	IPR023213	-
	Stsc242293g00001	443	PANTHER	TRICHOTHECENE 3-O-ACETYLTRANSFERASE	10	428	-	-
	Stsc242293g00001	443	Pfam	Transferase family	1	440	-	-
	Stsc242293g00001	443	Gene3D	-	1	194	IPR023213	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc242293g00001	Stsc-Chr242293	3451	5807	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc242293g00001	2	441	Monolignol Biosynthesis Gene Families	AT5G48930	34.279	1.24e-85	267

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc242293g00001	K13065		-	gmx:100779652	506.908