Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242290g00004 ATGCGCCAGATTGCGGAAGCATACTTAGAGGCACCTGTTCGTAAGGCTGTAATCACAGTACCTGCTTATTTCAATGGCTCTCAGCGCAAAGCTACCATAGATGCTGGCATCATTGTAGGTCTGAATGTAATGCGAATAATCAGTGAGTCAACATCTGCGGCCATTGCATATGGCCTTGACAAAAGATCTGATTGCACCGAAGAACGTAATGTGTTCATCTTTGATCTTGGTGGGGGTACTTTTGACGTTTCTCTCCTTACTATTAAGGGCAAGGTTTTCAAAGTTAAGGCCACTGCTGGAAACACTCACCTCGGTGGAGAGGATTTTGATAACAGAGTAGTTAGTTACTTTGTTAAGGAATTCGAGAGAAAGAATAAGGTAGACATTAGTGGCAATGCCAGAGCCTTAAGGAGATTGAGAACTGCTTGTGAGAAGGCCAAGAGGACCTTATCTTTTGCAGTTACTGCCTACGTCGAATTAGATGCTTTATTTAAAGGAATTGACTTCTGTTCATCAATCACGCGCGCTAGATTCGAAGAACTTAATATGGATCTCTTTAGAGAGTGCTTGGAAACGGATTCCCAAAGTGCAGGAGTTGTTGCAAGAATTTTTCAAGGGAAAGGAGCTTTGTTAAATGGAGGCACTGAGAGTAGTGCACCAAATTTGGTGCTGCAGGATGTTACTCCTCTGTCTCTTGGTAAAGCTACAAGAGGAGATGTTATGAGCATTGTTATTCCAAGGAATACTACCATTCCGGTAAAGAAGTCAGCGACTTTTGAGACGGTATGTGACAATCAATCAACTGTGCTTGAACAGATTTATGAAGGTGAGAGGACAAGAGCCAGCGATAACAACTTGCTTGGTCGATATACACTTTTGGGAATCCCTCCTGCTCCTAAAGGCCATCCTGTATCCATTAGTTTCGATTTAGATGCCAATGGTATCCTATGTGTAACTTCTGAGGAGAAGACCACTGGCAATAAAAGCCACATTACCATAACAAATGATAAAGGAGAATTTTCGCAGGAAGAAATTAAAAGGCTAATTGGGGAAGCCGAGAGATACAAGGTTGAAGATGAGAAGTTTCTTGAGAAAGCTAATGCAATTAATGCTTTGGATGATTATGTTTATGACATGGAGAAAGCCTTAATCGGTTCTAAGATTTGTGCTGAGGATAAGAAGAAGCTAAAGTCTGCTATTGATAAGGCTAGAACTTTGCTTGATGATGGTAATAAGGAGAAGAAAGAAATTGATGTGTTCGTGGAGCATCTTAATGAAGCTAAGCTCATTTTTGAGCTCATGATAGCTAAGACTGAAACGGGGAATAGAAAATCCGCAAGGAATGGGGATGGGGACGAAATTTCTCCCGTGGCGGGGAATGGGGTGAGGATGTGGAGAGATTTTGGGAGCGGGGACGGAGAGCAGAAAGACATCCCCCGCCCCCGCCTCGCCTTGCCTCATTGA 1464 0.429 MRQIAEAYLEAPVRKAVITVPAYFNGSQRKATIDAGIIVGLNVMRIISESTSAAIAYGLDKRSDCTEERNVFIFDLGGGTFDVSLLTIKGKVFKVKATAGNTHLGGEDFDNRVVSYFVKEFERKNKVDISGNARALRRLRTACEKAKRTLSFAVTAYVELDALFKGIDFCSSITRARFEELNMDLFRECLETDSQSAGVVARIFQGKGALLNGGTESSAPNLVLQDVTPLSLGKATRGDVMSIVIPRNTTIPVKKSATFETVCDNQSTVLEQIYEGERTRASDNNLLGRYTLLGIPPAPKGHPVSISFDLDANGILCVTSEEKTTGNKSHITITNDKGEFSQEEIKRLIGEAERYKVEDEKFLEKANAINALDDYVYDMEKALIGSKICAEDKKKLKSAIDKARTLLDDGNKEKKEIDVFVEHLNEAKLIFELMIAKTETGNRKSARNGDGDEISPVAGNGVRMWRDFGSGDGEQKDIPRPRLALPH 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242290g00004 487 PANTHER HEAT SHOCK PROTEIN 70KDA 1 192 IPR013126 GO:0005524|GO:0140662
Stsc242290g00004 487 PRINTS 70kDa heat shock protein signature 16 36 - -
Stsc242290g00004 487 PRINTS 70kDa heat shock protein signature 79 89 - -
Stsc242290g00004 487 PRINTS 70kDa heat shock protein signature 301 317 - -
Stsc242290g00004 487 FunFam Heat shock 70 kDa protein 215 369 - -
Stsc242290g00004 487 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 220 373 IPR029047 -
Stsc242290g00004 487 Gene3D Actin; Chain A, domain 4 105 188 - -
Stsc242290g00004 487 SUPERFAMILY Actin-like ATPase domain 1 61 IPR043129 -
Stsc242290g00004 487 FunFam Heat shock 70 kDa 105 188 - -
Stsc242290g00004 487 Gene3D - 1 93 - -
Stsc242290g00004 487 Gene3D - 369 466 IPR029048 -
Stsc242290g00004 487 ProSitePatterns Heat shock hsp70 proteins family signature 2. 73 86 IPR018181 -
Stsc242290g00004 487 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 368 437 IPR029048 -
Stsc242290g00004 487 Pfam Hsp70 protein 208 426 IPR013126 GO:0005524|GO:0140662
Stsc242290g00004 487 Pfam Hsp70 protein 1 191 IPR013126 GO:0005524|GO:0140662
Stsc242290g00004 487 SUPERFAMILY Actin-like ATPase domain 66 192 IPR043129 -
Stsc242290g00004 487 FunFam Endoplasmic reticulum chaperone BiP 1 74 - -
Stsc242290g00004 487 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 218 368 IPR029047 -
Stsc242290g00004 487 Coils Coil 393 413 - -
Stsc242290g00004 487 MobiDBLite consensus disorder prediction 466 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242290g00004 Stsc-Chr242290 20656 22971 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242290g00004 1 441 Calmodulin-binding Proteins AT3G12580 54.379 4.96e-173 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242290g00004 - - gmx:102667578 550.821