Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242290g00002 ATGAAGGACATGCAGTGGGAATTGACCTTGGCACCACATTCTCTTGTGTTGCCGTATGGCAGGAGCAACATTGTCGTGTTGAGATCATTCATAATGACCAGGGCAATAGAACAACACCCTCCTATGTTGCTTTCACTCAGAATCAAAGATGCTAAGAGATTAATCGGTAGAAAATACAGTGATACAATTGTCAAGAATGATATCCCGATGTGGCCATTTAAGGTCACTGCTGGCAATGATGATAAACCAATGATTGTTGTTACATACAAGGATCAAGAGAAGCACTTTTCTGCTGAAGAAATCTCATCTATGGTTCTCACTAAGATGCGCCAGATTGCGGAAGCATACTTAGAGGCACCTGTTCGCAACGCTGTTATTACCGTACCTGCTTATTTCAATGGCTCTCAGCGTAAAGCTACCAGAGATGCCTGCATCATTGCAGGTCTCAATGTAATGCGAATAATTAGTGAGCCAACTGCAGCGGCCGTTGCATATGCCCTTGGCAAAAGACCTGATTGCCTCAAAGAACGTAATGTGTTCATCTTTGATCTTGGTGGAGGTACTTTCGATGTTTCTCTCCTTACTATTAAGGGCAAGAAAATCAAAGTTCAGGCTACTGCCGGAAACACTCACCTCGGTGGAGAGGATTTTGATAACAGACTAGTGAGTTACTTTGTTAAGGAATTCAAAAGAAAGAATAAGGTTGACATTGGTGGCAATGCCAGAGCCTTAAGGAGATTGAGAACTGCTTGTGAGAAGGCCAAGAGGATCTTATCTTTTGCAGTTACCGCCTCCATCGAATTAGATGCTTTCTTTAAAGGAATTGACTTCTACTCATCAATCACGCGAGCTAGATTCGAAGAACTTAATATGGACCTCTTTAGAGAGTGCTTGAAAACGGTAGCTAGATGCATGTCTGATTCAAATATGGACATTTCTAGTGTGCATGACGTTGTGTTTGTTGGTGGCTCTTCTAGGATTCCTAAAGTGCAGGAGTTGTTGCAAGAATTTTTCAAGGGAAAGGAGCTTTGTAAGAGTATCAATCCTGATGAAGCTGTTGCTTATGGCGCAGCTGTTTCGGCTGCTATGTTAACTAGAGGCACTGAGAGTAGTGCACCAAATTTGGTGCTGCAGGATGTTACTCCTCTTTCTCTTGGTAAAGCTACAAAAGGAGATGTTATGAGCGTTGTGATTCCAAGGAATACTACCATTCCGGTAAAGAAGTCAGCGACTTTTGAGACGGTCTATGACAATCAATCATTTGTGCTTGAACTGATTTATGAAGGTGAGAGGAAAAGAGCCAGCGATAACAACTTGCTTGGTGTATTTACACTTTCAGGAACCCCTCCTGCTCCTAGAGGCCATCCGGTATCGATATGCTTCGACTTAGATGCCGATGGCATCCTATGTATAACTTCTGAGGAGAAGACCACTGGCAATAAAAACCAGATTACCATAACAAATGATAAAGGAACATTTTCGCGGGAAGAAATCGAAAGGCTAATTGAGGAAGCTGAGAGGTACAAGGTGAAGATGAGAAGTTTCTTGAGAAAGCTAATGCAATTAATGCTTTGGATGATTATGTTTATGACATGGAGAAAGCCTTAA 1608 0.421 MKDMQWELTLAPHSLVLPYGRSNIVVLRSFIMTRAIEQHPPMLLSLRIKDAKRLIGRKYSDTIVKNDIPMWPFKVTAGNDDKPMIVVTYKDQEKHFSAEEISSMVLTKMRQIAEAYLEAPVRNAVITVPAYFNGSQRKATRDACIIAGLNVMRIISEPTAAAVAYALGKRPDCLKERNVFIFDLGGGTFDVSLLTIKGKKIKVQATAGNTHLGGEDFDNRLVSYFVKEFKRKNKVDIGGNARALRRLRTACEKAKRILSFAVTASIELDAFFKGIDFYSSITRARFEELNMDLFRECLKTVARCMSDSNMDISSVHDVVFVGGSSRIPKVQELLQEFFKGKELCKSINPDEAVAYGAAVSAAMLTRGTESSAPNLVLQDVTPLSLGKATKGDVMSVVIPRNTTIPVKKSATFETVYDNQSFVLELIYEGERKRASDNNLLGVFTLSGTPPAPRGHPVSICFDLDADGILCITSEEKTTGNKNQITITNDKGTFSREEIERLIEEAERYKVKMRSFLRKLMQLMLWMIMFMTWRKP 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242290g00002 535 FunFam Heat shock 70 kDa 213 296 - -
Stsc242290g00002 535 Gene3D - 49 104 - -
Stsc242290g00002 535 PRINTS 70kDa heat shock protein signature 347 367 - -
Stsc242290g00002 535 PRINTS 70kDa heat shock protein signature 187 197 - -
Stsc242290g00002 535 PRINTS 70kDa heat shock protein signature 454 470 - -
Stsc242290g00002 535 PRINTS 70kDa heat shock protein signature 315 331 - -
Stsc242290g00002 535 PRINTS 70kDa heat shock protein signature 124 144 - -
Stsc242290g00002 535 PRINTS 70kDa heat shock protein signature 374 393 - -
Stsc242290g00002 535 ProSitePatterns Heat shock hsp70 proteins family signature 2. 181 194 IPR018181 -
Stsc242290g00002 535 Pfam Hsp70 protein 48 511 IPR013126 GO:0005524|GO:0140662
Stsc242290g00002 535 Gene3D - 170 344 - -
Stsc242290g00002 535 Coils Coil 498 518 - -
Stsc242290g00002 535 FunFam Heat shock 70 kDa protein 368 520 - -
Stsc242290g00002 535 Gene3D Actin; Chain A, domain 4 213 296 - -
Stsc242290g00002 535 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 373 509 IPR029047 -
Stsc242290g00002 535 ProSitePatterns Heat shock hsp70 proteins family signature 3. 318 332 IPR018181 -
Stsc242290g00002 535 Gene3D - 48 362 - -
Stsc242290g00002 535 FunFam heat shock 70 kDa protein-like 50 104 - -
Stsc242290g00002 535 PANTHER HEAT SHOCK PROTEIN 70KDA 48 512 IPR013126 GO:0005524|GO:0140662
Stsc242290g00002 535 SUPERFAMILY Actin-like ATPase domain 175 364 IPR043129 -
Stsc242290g00002 535 SUPERFAMILY Actin-like ATPase domain 45 169 IPR043129 -
Stsc242290g00002 535 FunFam Endoplasmic reticulum chaperone BiP 46 178 - -
Stsc242290g00002 535 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 365 523 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242290g00002 Stsc-Chr242290 7769 9896 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242290g00002 50 519 Calmodulin-binding Proteins AT3G12580 66.667 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242290g00002 K03283 - gmx:102667578 667.537