Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242289g00006 ATGAAAACCTTGGAGTTGGAGGAGAAAAGTAAATCCCTTCATAACAGGGAAGATGATTCTACAGCTAACGGGAAATGCAGAAGCAAATTCTATGATGTCTATGGACCCGAAGGCAAGGCAGATGTTGTTTTCAAGTCACCAGAAGATAATTCAGCACTAAATCTCAATGACATTCAGGGACTAATAACTTGGGTGCTTGGGGAAGGATTTATGCCATCTTGGGTTTTTATAAAGAATAAGCCTCTTATTCCCAAAGTGGTTATGCTCTATATGCCAGGTCTGGATGCAGCTTTGTTTCTGTCACAGTCTAAAATGCTTCCCTGTTTAAAGAAGTACTGTGGGAAACCAAGGCCAGTCCTAGCTCTTAGCTGTGTATCAGATAGTATGCAGACAATAGATGCACTCCTAACATGCAAACTCAAAAGAAAGAGGGATCAAACTGGTTCAGTTAAGAGGAATTCTGCATTGATATCTCGACAAGAAGGCGTCTCTCCTGGTATCGAGAGTTTAACATTTATGGATCTTACAAAAGACATACCTTTCCCTATTACATATTATACACTAACGGAGAAAGAACTGGAAGATAATGGGTATTCCGTTAATCAGCCAGGTTTTCTTTCTACCTTACCAGCTCCATCGGGATCTTCTTTTCATGAGATCTTAGCACTTGATTGTGAGATGTGCATAACAAAGGAGGGTTTTGAGCTGACAAGAGTTACTCTGGTGAATATCAATGGACAGGTTGTGCTAGATAAATTGGTTAAGCCATCAAATGATATCGTTGATTACAACACAAGATTTAGCGGAATAACATACGAAATGCTAGATGGGGTAATGACAAGGCTGAGTGACATTCAGAAAGAATTTCTAGAACTGGTTTACAAGGAGACTTTCCTAGTTGGACATTCTTTAGAAAATGATTTACTAGCATTGAAGATATCACATGGCTTGATCATTGACACAGCTGTGTTGTACAAAAATCCCCGAGGAAAATCTTATAAAACTGCTCTGCGGCATCTTGCTAAAGGATTTCTTTCCAGGGAAATACAACTGTTGGCAAGTGGACATGACAGTGTTGAAGATGCTAGAGCAACCATGGAATTGGCAATATTAAAGATCAGAAATGGGCCTGACTTTGGTTCACCACCATCCTTTATGCGTAGAAAACTCCTCTCTGTTTTGAGCGAGTCTGGGAAAACGTCCTCCTTGATTGATGATATATCCATTGTAAGACGATATGCCTCTGAATCTTCACATGCAATTCCGGTGACCTCTGATGATGAAGCACTTGCAAAGATCAACAAGGAGGTGAAGAATGAAAAGGTACATTTTATATGGACTCAGTTTTCCGAGTTAAAATCATACTTACAGAAACAAGTTGAAGATTCAGAGGACTTGAATAGAAGACTTGCAGAGATGATAGCATTATTTACATGTCAGAAGATTTTTGACAATGGTAAAGGGAAGCCGAGTGCACCTGCTGAACTGAAGGAAATTCTGGCACGCATGGATGCCAGAATTAGTTCTGTTTATACATCATTGCCCACAAACGCTATGTTGATAATTTGCACCGGTCATGGAGACACAGCAATTGTGCGCAGGCTGAGGAAAATGCTGGTTGAGCAGGGTGAAAGTAACTTTAGTCGAGAGAAGCTTGTGGAAATTCTGGAAGAGGTTCAAGCGCGAGCTGAAGTAGCTTTGTGTTTTGTAGGTGTAAAGCACTGA 1725 0.4041 MKTLELEEKSKSLHNREDDSTANGKCRSKFYDVYGPEGKADVVFKSPEDNSALNLNDIQGLITWVLGEGFMPSWVFIKNKPLIPKVVMLYMPGLDAALFLSQSKMLPCLKKYCGKPRPVLALSCVSDSMQTIDALLTCKLKRKRDQTGSVKRNSALISRQEGVSPGIESLTFMDLTKDIPFPITYYTLTEKELEDNGYSVNQPGFLSTLPAPSGSSFHEILALDCEMCITKEGFELTRVTLVNINGQVVLDKLVKPSNDIVDYNTRFSGITYEMLDGVMTRLSDIQKEFLELVYKETFLVGHSLENDLLALKISHGLIIDTAVLYKNPRGKSYKTALRHLAKGFLSREIQLLASGHDSVEDARATMELAILKIRNGPDFGSPPSFMRRKLLSVLSESGKTSSLIDDISIVRRYASESSHAIPVTSDDEALAKINKEVKNEKVHFIWTQFSELKSYLQKQVEDSEDLNRRLAEMIALFTCQKIFDNGKGKPSAPAELKEILARMDARISSVYTSLPTNAMLIICTGHGDTAIVRRLRKMLVEQGESNFSREKLVEILEEVQARAEVALCFVGVKH 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242289g00006 574 CDD REX1_like 221 369 IPR034922 -
Stsc242289g00006 574 Gene3D - 216 377 IPR036397 GO:0003676
Stsc242289g00006 574 SUPERFAMILY Ribonuclease H-like 220 373 IPR012337 -
Stsc242289g00006 574 MobiDBLite consensus disorder prediction 1 22 - -
Stsc242289g00006 574 SMART exoiiiendus 219 378 IPR013520 -
Stsc242289g00006 574 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 30 396 IPR047021 GO:0004527
Stsc242289g00006 574 Pfam Exonuclease 222 368 IPR013520 -
Stsc242289g00006 574 FunFam RNA exonuclease NEF-sp 216 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242289g00006 Stsc-Chr242289 13699 22941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242289g00006 220 368 C2H2 Transcription Factor Family AT5G40310 28.743 2.43e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242289g00006 K14570 - gmx:100796963 881.322