Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242289g00005 ATGCCATCTTGGGTTTTTATAAAGAATAAGCCTCTTATTCCCAAAGTGGTTATGCTCTATATGCCAGGTCTGGATGCAGCTTTGTTTCTGTCACAGTCTAAAATGCTTCCCTGTTTAAAGAAGTACTGTGGGAAACCAAGGCCAGTCCTAGCTCTTAGCTGTGTATCAGATAGTATGCAGACAATAGATGCACTCCTAACATGCAAACTCAAAAGAAAGAGGGATCAAACTGGTTCAGTTAAGAGGAATTCTGCATTGATATCTCGACAAGGTTTTCTTTCTACCTTACCAGCTCCATCGGGATCTTCTTTTCATGAGATCTTAGCACTTGATTGTGAGATGTGCATAACAAAGGAGGGTTTTGAGCTGACAAGAGTTACTCTGGTGAATATCAATGGACAGGTTGTGCTAGATAAATTGGTTAAGCCATCAAATGATATCGTTGATTACAACACAAGATTTAGCGGAATAACATACGAAATGCTAGATGGGGTAATGACAAGGCTGAGTGACATTCAGAAAGAATTTCTAGAACTGGTTTACAAGGAGACTTTCCTAGTTGGACATTCTTTAGAAAATGATTTACTAGCATTGAAGATATCACATGGCTTGATCATTGACACAGCTGTGTTGTACAAAAATCCCCGAGGAAAATCTTATAAAACTGCTCTGCGGCATCTTGCTAAAGGATTTCTTTCCAGGGAAATACAACTGTTGGCAAGTGGACATGACAGTGTTGAAGATGCTAGAGCAACCATGGAATTGGCAATATTAAAGATCAGAAATGGGCCTGACTTTGGTTCACCACCATCCTTTATGCGTAGAAAACTCCTCTCTGTTTTGAGCGAGTCTGGGAAAACGTCCTCCTTGATTGATGATATATCCATTGTAAGACGATATGCCTCTGAATCTTCACATGCAATTCCGGTGACCTCTGATGATGAAGCACTTGCAAAGATCAACAAGGAGAATGAAAAGGTACATTTTATATGGACTCAGTTTTCCGAGTTAAAATCATACTTACAGAAACAAGTTGAAGATTCAGAGGACTTGAATAGAAGACTTGCAGAGATGATAGCATTATTTACATGTCAGAAGATTTTTGACAATGGTAAAGGGAAGCCGAGTGCACCTGCTGAACTGAAGGAAATTCTGGCACGCATGGATGCCAGAATTAGTTCTGTTTATACATCATTGCCCACAAACGCTATGTTGATAATTTGCACCGGTCATGGAGACACAGCAATTGTGCGCAGGCTGAGGAAAATGCTGGTTGAGCAGGGTGAAAGTAACTTTAGTCGAGAGAAGCTTGTGGAAATTCTGGAAGAGGTTCAAGCGCGAGCTGAAGTAGCTTTGTGTTTTGTAGGTGTAAAGCACTGA 1380 0.4051 MPSWVFIKNKPLIPKVVMLYMPGLDAALFLSQSKMLPCLKKYCGKPRPVLALSCVSDSMQTIDALLTCKLKRKRDQTGSVKRNSALISRQGFLSTLPAPSGSSFHEILALDCEMCITKEGFELTRVTLVNINGQVVLDKLVKPSNDIVDYNTRFSGITYEMLDGVMTRLSDIQKEFLELVYKETFLVGHSLENDLLALKISHGLIIDTAVLYKNPRGKSYKTALRHLAKGFLSREIQLLASGHDSVEDARATMELAILKIRNGPDFGSPPSFMRRKLLSVLSESGKTSSLIDDISIVRRYASESSHAIPVTSDDEALAKINKENEKVHFIWTQFSELKSYLQKQVEDSEDLNRRLAEMIALFTCQKIFDNGKGKPSAPAELKEILARMDARISSVYTSLPTNAMLIICTGHGDTAIVRRLRKMLVEQGESNFSREKLVEILEEVQARAEVALCFVGVKH 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242289g00005 459 FunFam RNA exonuclease NEF-sp 103 267 - -
Stsc242289g00005 459 Gene3D - 103 264 IPR036397 GO:0003676
Stsc242289g00005 459 SMART exoiiiendus 106 265 IPR013520 -
Stsc242289g00005 459 Pfam Exonuclease 109 255 IPR013520 -
Stsc242289g00005 459 SUPERFAMILY Ribonuclease H-like 107 260 IPR012337 -
Stsc242289g00005 459 CDD REX1_like 108 256 IPR034922 -
Stsc242289g00005 459 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 1 283 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242289g00005 Stsc-Chr242289 13699 22941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242289g00005 107 255 C2H2 Transcription Factor Family AT5G40310 28.743 1.62e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242289g00005 K14570 - gmx:100796963 705.286