Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242289g00002 ATGGATTCTGAGAATTTTGTTGATTGTTGTCCTGATTTCATTGATGAAGATTCTTCGAAAATTTTGAGAGAATTGACTAATGTTAGTCAAGAACAACATCATGAAGTTCCTTCTACTGAAGAAGCCCTTCAGCATGAAGAGGTACCAGATCATTCTAATCTATGTGTGGCTGAAATTCCAAAAGAGGGCATGTCTTTTCAATCTTGTGGTGAAGCTCATGGATTTTATAAGAACTATGCTTCCAAAGTGGGTTTTTTGGTCAAAATCAAGACCACTAATTATGTTCAGAATGTTAATGGAGAGAAGATAATTGCAAACCAATCTATTCTTTGTAACAAGCATGGCAATCAGACTTCTTGTGTACTTGCTCCCATCAGATCTAAGAAGATTGCATCAGAAAAGTGCAAGGCTAGGGTTTATGTGAAGTTGGACAAAGAAGAAGGGACTTGGTTTTATGCAATATTTGAGGCAAAGCACAGACATGCTTGTTCTCCTTAA 498 0.3675 MDSENFVDCCPDFIDEDSSKILRELTNVSQEQHHEVPSTEEALQHEEVPDHSNLCVAEIPKEGMSFQSCGEAHGFYKNYASKVGFLVKIKTTNYVQNVNGEKIIANQSILCNKHGNQTSCVLAPIRSKKIASEKCKARVYVKLDKEEGTWFYAIFEAKHRHACSP 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242289g00002 165 MobiDBLite consensus disorder prediction 29 48 - -
Stsc242289g00002 165 Pfam FAR1 DNA-binding domain 75 164 IPR004330 -
Stsc242289g00002 165 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 25 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242289g00002 Stsc-Chr242289 2047 3047 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc242289g00002 FAR1 9.9e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242289g00002 - - aip:107606714 110.538