Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242288g00001 ATGGAATCGCCAACAACACCTAGCTGGTTTTATGATCTGCAGGAAATGGAAGATGATTATAACAATTTCTTTCCCAAAGAGAACAACAACATGAACAACTTACTTGATGATTATGATGAAGATTATCTTCTCACACATGACATAGAGGATTCAATCATGTTTGAGTCACTAAGCAATAACAATAACCCTTCCATTGATGATGGTGATGAGAGGCCTTCTAAACTTCTCAAAACAAGTACCAATAATAGTAATTCTAATAATTCCGCATCATTATCACCAAAATTTTCTTCCATCTCATCATCATCATCAACAACATCATCATTTCAGTCACATATTCTGTGTTTTGACAACTCAAATTCCTCTCCTAATAATAATCATAACAATAATGATGATGCCACTCATCAGCTCTATGATTTAGATTATGCCACCATGAACACAAAGACAAAGAAAAATGGGGTGGTAAGTGGGTCATCAAAAAATAAAAACTTGGTCACAAAACCCTCATCACATGGTTCTTCTAAGAAGTCACCATCTCATGCTCAAGATCATATCATAGCTGAGAGAAAGAGAAGAGAGAAGATCAGCCAGAGTTTCATTGCTCTTGCCGCTCTTGTTCCTGGCCTCAAGAAGATGGACAAGGCCACTGTATTAGACAACGCTATCAATTACGTGAAAGATCTAAAAGCCCGTCTTGCAACACTTGAACAAGAGAAGAAAACAAAGCAAGTAGAAGAGCCTTGTGTGGTTGTTCTTAGCAAAAGATCGTCAAAACATGATGATGATGAGAGTAGTGAGAATGATGATGAGAATAATAATGAGAGCGTTGTTATTGATAATGATAATGATAATGATTCTTGTTCACTTCTCCATCATCATCATGTTCATGTGGAAGCAAGAGTATCAGGGCAACAGGTACTGCTTCGGATTCACTGCCACAATCATAAGGGTATTTTGGTCAAATTGCTCTCCGAGATTCAAGGGCTTAACCTACTTGTTCTCAATAGCAGTGTCTTGCCTTTTGGAGATTCCCTTCTTGATATAACCGTCATTACTCAGATGGGCGAAGGTTACAATTTGACCCTTAAGGAACTTGTCAAGAGCATACGCGTGGAAACATTGAAGTTCATATCATGTCATTAA 1140 0.3763 MESPTTPSWFYDLQEMEDDYNNFFPKENNNMNNLLDDYDEDYLLTHDIEDSIMFESLSNNNNPSIDDGDERPSKLLKTSTNNSNSNNSASLSPKFSSISSSSSTTSSFQSHILCFDNSNSSPNNNHNNNDDATHQLYDLDYATMNTKTKKNGVVSGSSKNKNLVTKPSSHGSSKKSPSHAQDHIIAERKRREKISQSFIALAALVPGLKKMDKATVLDNAINYVKDLKARLATLEQEKKTKQVEEPCVVVLSKRSSKHDDDESSENDDENNNESVVIDNDNDNDSCSLLHHHHVHVEARVSGQQVLLRIHCHNHKGILVKLLSEIQGLNLLVLNSSVLPFGDSLLDITVITQMGEGYNLTLKELVKSIRVETLKFISCH 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242288g00001 379 Coils Coil 217 244 - -
Stsc242288g00001 379 MobiDBLite consensus disorder prediction 75 100 - -
Stsc242288g00001 379 MobiDBLite consensus disorder prediction 149 183 - -
Stsc242288g00001 379 Gene3D - 170 244 IPR036638 GO:0046983
Stsc242288g00001 379 PANTHER BHLH TRANSCRIPTION FACTOR 46 372 - -
Stsc242288g00001 379 SMART finulus 184 233 IPR011598 GO:0046983
Stsc242288g00001 379 MobiDBLite consensus disorder prediction 58 100 - -
Stsc242288g00001 379 Pfam Helix-loop-helix DNA-binding domain 182 227 IPR011598 GO:0046983
Stsc242288g00001 379 MobiDBLite consensus disorder prediction 251 277 - -
Stsc242288g00001 379 MobiDBLite consensus disorder prediction 149 175 - -
Stsc242288g00001 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 244 IPR036638 GO:0046983
Stsc242288g00001 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242288g00001 Stsc-Chr242288 2508 7471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242288g00001 9 376 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.400 1.81e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc242288g00001 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242288g00001 - - ahf:112720570 325.479