Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242287g00006 ATGGGGAAGTTGATACTCCCATTTGTGGGGATGATTATGGCCGAACTTGCTCAGGTTGGGTTGATCATACTCAGCAAGCAAGTCATGGCAAAAGGAATGTCCAACTTCATCTTCATTTTTTACTCCAACTCCCTTGCTTCCCTCATTCTTCTCCCTTCTTCCTTCTTCATCCACAGATTTAACCGCCCTCCAATTACCTTCTCCACCATTATTGGATGCTTCTTACTTGGGCTACTCGGTTTTATGGCACAGGCTTTTGGGTATGCTGGTATTAACTACAGTTCAGCTACACTCAGCACTGCATTGCTCAACCTTGTTCCTGGCTTTACCTTTGTACTTGCCGTTCTTTTCAGGTTGGAACAACTTGATTGGAGAAACTCTAGCAGCTTAGCTAAATCATTGGGTACAATAGTATCGATTGCCGGTGCATTTGTTGCGACTTTGTACAAGGGCCCTGCAATTCTGACGGGACTATTGCCTACTAACTCATCTCCACAGCCACTTTTGTCACAAGATCCCAACTGGATACTCGGAGGACTATTTCTTGCAGCGGATTGTGTGATGGCTTCAGCATTTATAATCGTACAGGCATATGTTCTTAAGAAATTTCCAGCGGAGTTTATTGTTGTGTTCTTTTATTGTTTCTTCGTGGCCATTCAATCTGCTGTGACCTGTTTAGTTATGGAAAGAGACATCGGTGCTTGGAGCTTGGAACCAAAGCAAAGATTGCTCACAGTTCTATACTCGGCAGTCTTTGGTTCTGTCTTTCAAGTTAGTGTCACTACTTGGTGTTTGCGCCAGACAGGACCTGTTTTTGTTTCCATGTTCAAGCCCATAGGAATCGTCATATCGGTGGTCATAGGCGTTGCTTTCCTCGGTGATGCATTCTATCTCGGAAGTTTGGTTGGTGCTACTGTGATTGTTCTTGGGTTTTATTCTGTACTGTGGGGAAAAGCCAGAGATATTGAGCAAGTTAGCTTGGAATCAAGAGGGAAACAAACCCCTCTTTTGAAAGAAAACAATACTGAAGAGATATAA 1038 0.4345 MGKLILPFVGMIMAELAQVGLIILSKQVMAKGMSNFIFIFYSNSLASLILLPSSFFIHRFNRPPITFSTIIGCFLLGLLGFMAQAFGYAGINYSSATLSTALLNLVPGFTFVLAVLFRLEQLDWRNSSSLAKSLGTIVSIAGAFVATLYKGPAILTGLLPTNSSPQPLLSQDPNWILGGLFLAADCVMASAFIIVQAYVLKKFPAEFIVVFFYCFFVAIQSAVTCLVMERDIGAWSLEPKQRLLTVLYSAVFGSVFQVSVTTWCLRQTGPVFVSMFKPIGIVISVVIGVAFLGDAFYLGSLVGATVIVLGFYSVLWGKARDIEQVSLESRGKQTPLLKENNTEEI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242287g00006 345 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 319 - -
Stsc242287g00006 345 Pfam EamA-like transporter family 20 146 IPR000620 GO:0016020
Stsc242287g00006 345 Pfam EamA-like transporter family 179 315 IPR000620 GO:0016020
Stsc242287g00006 345 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 149 - -
Stsc242287g00006 345 PANTHER WAT1-RELATED PROTEIN 7 322 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242287g00006 Stsc-Chr242287 22303 25273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242287g00006 3 345 Nodulin-like Gene Family AT3G28050 44.380 1.71e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242287g00006 - - gmx:100804932 532.717