Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242284g00002 ATGAAACCTTCCATAATAACTTGCTCTCTTCTAATCATCTTCCTCCTCTTCACTTCCACCATCTCAGCCAACACCTTCAAGGCCTACATCACTCCCAGTTTCAGTGCCTCATTCCTCAAATTCATTGATGACTCAGGCACCTTCTTAACATCTCCAAATGGAACATTCAAGGCTGCAATATTCAACCCTGGTGCCCAGCAAACCAGCTTCTATCTCTGCATAATCCATGTTGCATCAAGCACCATCACTTGGTCTGCCAACCGCAACCGCGCCGTTTCCAACTCCGGCCTAATGAATCTAACCCTTAAAGGGATAACAATTTCTGATAAAAATGGAAACAATAATCCTGTATGGTCAACTCCACCATTGAGATCACAAGTTGATAGGCTTGTCCTCACTGACATGGGCAACCTCATACTCCTTGATCCTTCCAATGTTTCTCTTTGGGAAAGTTTTCGCTACCCAACCGACACAATTGTAATCGGCCAGCGTTTATCCGTTGGATCATCTTTGTCAAGTTCTTCATCAGATTCAGACTTGTCCCCTGGAAACTACAACCTCACAATCACTTCCTCTGATGCAATCCTCCAATGGTTTGGTCAGACATATTGGAAACTTTCAATGGACACAAAAGCATACAAGAATTCATTAAGCACGGTGGAGTACATGGCTGTGAACACAACAGGATTCTACCTATTTGGAAGTGATGGAACAGTTCCTGTGTATCTGGTAACCCTACCGGTATCGAATTTTCGAGTAGCTACATTGGATAACTATGGCCATTTTATAATCAAAAGTTTCTCTTTCGGAACCGGTTGGAAGCAGGAATTTGTTGGGCCAGATGATGGGTGTGGAACACCCTTAGCTTGTGGCAGAGTTGGTTTATGCACTGATTATGATGATCCCTCCTCCTCTTCTTCTTCTTCATCATCATCTTCACCTGTTTGTTCTTGTCCCCAAAATTTTCGAGTAGGTTCTGGTAACTCTGGTGGTTGTGTTCCAAGCAATGGTTCTTATTCCTTACCATTTTCTTGTAACAACAACCAATCAAATTCTTCTCTAGTTGTTCCTTCATTCTTGAGTCTTGGAAATGGTTTGGACTACTTTCACAATATCTACTCTGATCCTGTTATGGACAGTGTGGATTTATCTTCGTGTCAAGATCAATGTTCCAAGAATTGTTCATGTTTGGGAGTTTTCTATAGAAACTCATCTGGATCATGCTATGTGATTGAAAATGAATTGGGGTCAATTTTGTCAAGTAACAATGGAGCCAATCAAGACATGTTTGGATTCATCAAGGTTTCTTTAGGATCCACAACCACCAATGATGGTACTAGAGATGGTGAGACTTCTCAAGATGGCAGTGGCCAGTTTCCGGTGGCGGCCGCCGTGTTGTTACCTGTCACAGGCTCCACTCTCTTGGTGGCCTTTCTTTTCTTCTGGTGGAGAAGATCCATCAAAAGTTCCAAAAGACAAGATATGAACAAATTTGGAAAAACTAATAATAATAATAATCCTCATTCTTCCGGGGACCTTGATGCCTTCTACATCCCGGGTTTACCGAGAAGATTCGACTACGAGGAACTCGAAAAGGCCACCGATGATTTCAAAACTCTGATCGGCTCCGGTGGATTTGGTACGGTCTACAAAGGAGTTCTCTCCGACAACGCCGTCGTGGCGGTCAAGAAAATAGTCAACATAGGAGTACAAGGCAAGAAAGACTTTTGTACAGAGATTGCTGTCATTGGAAACATTCATCATGTCAATCTTGTCAAGCTAAAAGGCTTTTGCGTCCAAGGGAGACATCGATTTTTGGTGTATGAATACATGAATCGTGGTTCCCTCGACCGAACCTTATTCGGTGGAGGGCCACCGTTGGAATGGCAAGAGAGGTATGACGTGGCGTTGGGGACGGCGCGTGGCCTTGCCTACCTTCATGCCGGGTGTGAGCACAAGATTATACATTGCGATATCAAACCTGAAAATATTCTTTTACATGATCATTTTCAAGCTAAGATATCGGATTTTGGACTATCAAAACTACTTAGCCCCGAGCAATCGGGGCTATTCACAACGATGCGAGGTACTCGTGGGTACCTCGCTCCAGAATGGCTCACAAATTCCGCCATTACAGAAAAGACTGATGTGTATAGTTTCGGTATGGTCCTCCTTGAACTTATAAGCGGAAGGAAAAATTGTTATTTCAAATCAAGAAGTCATAGTGTGGACGAGGATAGCAATAGCGGTGGCAGAGGAGGAGGCGGCGGCGGTCATAACTCTTCGTCATCTTCGATGCCGGGGTTGATTTATTTCCCTTTGTTGGCTCTGGAGAAGCATGAAGAAGGGAGCTACATGGATCTTGCTGATCCAAGATTAGAAGGGCGCGTGACGAATGAGGAGGTGGAGAAGCTTGTGAGGATTGCGTTGTGCTGTGTCCATGAAGAGCCGGCGTTGAGGCCGAACATGGCGGCGGTTGTTGGGATGTTGGAAGGTGGTACGGCGTTGCCGCAGCCAAGGATAGAGTCTTTGAACTTTTTAAGGTTTTATGGTCGTAGGTTTACGGAGGCTTCAATGATAGCTGAAGAGAATGATGAAAATGGAGGAACACCACAAGGTAATTCTTCAAGCGTGACAAGTGGTGGCTCTCAAGTTGCTTTGGTTTCTTACATATCTTCACAGAGTATCTCAGGGCCAAGATAG 2703 0.4436 MKPSIITCSLLIIFLLFTSTISANTFKAYITPSFSASFLKFIDDSGTFLTSPNGTFKAAIFNPGAQQTSFYLCIIHVASSTITWSANRNRAVSNSGLMNLTLKGITISDKNGNNNPVWSTPPLRSQVDRLVLTDMGNLILLDPSNVSLWESFRYPTDTIVIGQRLSVGSSLSSSSSDSDLSPGNYNLTITSSDAILQWFGQTYWKLSMDTKAYKNSLSTVEYMAVNTTGFYLFGSDGTVPVYLVTLPVSNFRVATLDNYGHFIIKSFSFGTGWKQEFVGPDDGCGTPLACGRVGLCTDYDDPSSSSSSSSSSSPVCSCPQNFRVGSGNSGGCVPSNGSYSLPFSCNNNQSNSSLVVPSFLSLGNGLDYFHNIYSDPVMDSVDLSSCQDQCSKNCSCLGVFYRNSSGSCYVIENELGSILSSNNGANQDMFGFIKVSLGSTTTNDGTRDGETSQDGSGQFPVAAAVLLPVTGSTLLVAFLFFWWRRSIKSSKRQDMNKFGKTNNNNNPHSSGDLDAFYIPGLPRRFDYEELEKATDDFKTLIGSGGFGTVYKGVLSDNAVVAVKKIVNIGVQGKKDFCTEIAVIGNIHHVNLVKLKGFCVQGRHRFLVYEYMNRGSLDRTLFGGGPPLEWQERYDVALGTARGLAYLHAGCEHKIIHCDIKPENILLHDHFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAITEKTDVYSFGMVLLELISGRKNCYFKSRSHSVDEDSNSGGRGGGGGGHNSSSSSMPGLIYFPLLALEKHEEGSYMDLADPRLEGRVTNEEVEKLVRIALCCVHEEPALRPNMAAVVGMLEGGTALPQPRIESLNFLRFYGRRFTEASMIAEENDENGGTPQGNSSSVTSGGSQVALVSYISSQSISGPR 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242284g00002 900 FunFam serine/threonine-protein kinase PBS1-like 504 610 - -
Stsc242284g00002 900 Gene3D Transferase(Phosphotransferase) domain 1 611 838 - -
Stsc242284g00002 900 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Stsc242284g00002 900 Gene3D Phosphorylase Kinase; domain 1 514 610 - -
Stsc242284g00002 900 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 206 IPR036426 -
Stsc242284g00002 900 CDD B_lectin 45 155 IPR001480 -
Stsc242284g00002 900 Pfam Protein kinase domain 538 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242284g00002 900 MobiDBLite consensus disorder prediction 741 764 - -
Stsc242284g00002 900 ProSiteProfiles Bulb-type lectin domain profile. 34 153 IPR001480 -
Stsc242284g00002 900 SMART serkin_6 535 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242284g00002 900 CDD STKc_IRAK 541 832 - -
Stsc242284g00002 900 ProSiteProfiles PAN/Apple domain profile. 345 434 IPR003609 -
Stsc242284g00002 900 SUPERFAMILY Protein kinase-like (PK-like) 513 830 IPR011009 -
Stsc242284g00002 900 Pfam D-mannose binding lectin 81 167 IPR001480 -
Stsc242284g00002 900 ProSiteProfiles Protein kinase domain profile. 535 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242284g00002 900 FunFam Serine/threonine-protein kinase 611 841 - -
Stsc242284g00002 900 PIRSF SRK 2 886 IPR024171 GO:0004674
Stsc242284g00002 900 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 39 839 - -
Stsc242284g00002 900 Gene3D - 44 164 - -
Stsc242284g00002 900 SMART blect_4 40 155 IPR001480 -
Stsc242284g00002 900 ProSitePatterns Protein kinases ATP-binding region signature. 541 564 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242284g00002 Stsc-Chr242284 18530 21476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242284g00002 518 839 Receptor kinase-like Gene Family AT5G20050 42.687 3.68e-76 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc242284g00002 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242284g00002 - - psat:127084110 1128.62