Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242283g00004 ATGATGGTGGATACAGGTTCTGTGTCAAGAGGGGTTGATTCCCTTGTGGATATGATGCATGCGAAAGATAACGAAGACCGATTTGCAAGTGCAAGGTGGAAAAGTGAGGATGGAAGACTTAGCTGCGGATATTCAAATGTTAAAGGGAAGCGAGTGACGATGGAGGATTTTTTTGATATTAAAACATTGAAGATTGGTGGTCATTCAGTATGCTTATTTGGAATATTTGATGGTCATGGTGGTTCTCGTGCTGCAGAGTATTTGAAAGAGCATCTCTTTGATAATCTCATGAAGCATCTAAAATTTTTTACTGATGCTAAATTGGCTATAAGTGAAACATATCAAGGGACTGATTCTCAATTTCTGAATTCTGAGAAAGATTCTTTTCGGGATGATGGCTCTACTGCTTCAACAGCTGTTTTGATTGATAGTCATCTTTATGTTGCTAATGTTGGAGATTCTAGGACTATAATATCAAAGGCGGGTAAAGCAATTGCTCTTTCTGAGAATCACAAGCCAAACAGAAGTGATGAACGAAAAAGGATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTAGGAGGCGTATTAGCAATGTCTCGCGCTTTCGGCAATCGTATGTTGAAGCAGTTTGTTGTTGCAGAACCTGAGATTCAGGTGATCCTTACTTACTTTGTGTGA 693 0.4026 MMVDTGSVSRGVDSLVDMMHAKDNEDRFASARWKSEDGRLSCGYSNVKGKRVTMEDFFDIKTLKIGGHSVCLFGIFDGHGGSRAAEYLKEHLFDNLMKHLKFFTDAKLAISETYQGTDSQFLNSEKDSFRDDGSTASTAVLIDSHLYVANVGDSRTIISKAGKAIALSENHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQVILTYFV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242283g00004 230 SMART PP2C_4 31 227 IPR001932 -
Stsc242283g00004 230 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
Stsc242283g00004 230 CDD PP2Cc 41 225 IPR001932 -
Stsc242283g00004 230 Gene3D - 30 227 IPR036457 -
Stsc242283g00004 230 ProSiteProfiles PPM-type phosphatase domain profile. 41 230 IPR001932 -
Stsc242283g00004 230 Pfam Protein phosphatase 2C 45 224 IPR001932 -
Stsc242283g00004 230 SUPERFAMILY PP2C-like 33 225 IPR036457 -
Stsc242283g00004 230 PANTHER PROTEIN PHOSPHATASE 33 224 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242283g00004 Stsc-Chr242283 23851 27276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242283g00004 1 223 PP2C-type Phosphatase Gene Family AT5G53140 73.094 1.96e-119 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242283g00004 K17506 - gmx:100805795 387.497