Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242282g00006 AAGGCATATGCTAGGAGGCAACATGTATGGCTCACAGGTGCAAACGAGGTGGACAGCAAAACTTTTACCAGAGCTATTCTAGCCAAGACCGTGGTGTGCATTCCTCTATTGGACGGTGTCGTTGAGTTTGGCACAATAGATAAGGTCCAAGAAGACATTAAGTTTATCCAACACGTCAAGAGTTTTTTTATAGAGCACCACCATGGCTCCTGTCCTCCACCGCCAAAGCCCGCCCTCTCTGAGCATTCCACCTCCAATCCTGCATCTTCATCCGATCGCCTCATTTATACTGTAGCTGATCCTCCACTGCCTCCGTCTAATAACCTTACTAATCAAGACAATATGGAAGAAGATGAAGAAGATGACGACGAAGATGATGACGATGAAGAGGAAGAAGGAGCACCTATATTAGACTCTGAATATGAAACGAGATGTAATAACACTCATCTAACCTCAACAGCAGATGCTTCAGCTGGAATTGTAGAGCCAAGTGAATTGATGCAATTAGAAATGTCCGAAGATATTAGAGTCGGATCATCACCTAACGACGGATCAAATAATCTTGATTCAAATTTTCATTTACTGGCTGTTACCGAAACAAATAATCCATCGGGTCAAGTCGACTCCTATCGAATTGATGCGACTCAAAGATGGGACTCAATGCAAGACCCTTTGGGTGAGCTTCAAGTTCAACTACCGAGTTCATCAGTGTTTCCGCCACTAGAAGATCAAATATTGGCACAAGAAGATGACCATTATTCTCAAACTGTATCAAGCATCCTCCAAAACCAATCAACACGTTGGGCTGACTCCCCTTCAATAGCATGCTACGTCACTTGCTCCAACCAATCAGCATTCGCCAAGTGGACAGCCGTCGACCCGAACGACCATCTCCACGCAGCCACGGCTGACGGCTCATCCCAATGGCTCCTAAAATACATCCTATTTACTGTGCCCTACCTACACTCCAACAAAAACAATGAAGAAAACAATAGCTCTCCGAATAACACAAACCCTACCAGCTCAGCCGGCACAGACCGGCTACGCGGAGGGGGAAAAGGCAGCGGCACTCCACAGGATGAGCTGAGTGCCAACCACGTCCTGGCGGAGCGCCGCCGCCGAGAGAAATTGAACGAGAGATTCATCATCCTAAGATCGCTTGTCCCATTTGTCACCAAAATGGACAAAGCTTCAATTTTAGGGGACACCATTGAATATGTGAAACAGCTTCGAAGGAAGATCCAAGACTTAGAAGCACGTAACCGCCAAATAGAAGCTGAACCACAACGTTCGAAGACACCATCAACAACAATTGAAGTTCACCATAGTGGCTCCTCCAACAAGGAACAACAACAACATACGGCGGTTGTGGTAGGGCATGAAAAGAGGAAGGTGAGGATTGTGGAGGGGACAAAGACGGGGACCAAGGCGGCAGTGGCAGCCGCGGCCGCAGAGGCGTCGGTGCAAGTTTCAATTATAGAGAGTGATGCATTGTTGGAGTTGGAGTGTAATCACAGGGAAGGGTTACTACTTGATGTGATGTTGGTGTTAAGAGATATGAAGATTGAGGTTATTGGGGTTCAATCTTCACTCAGCAATGGAGTTTTTGTGGCTGAATTGAGGGCTAAAGTTAAGGAGAATAATAATAGTAATAGTGGCACAAATGGGAAGAAGGTTAGCATTGTGGAAGTGAAGAAAGCATTAAATCAGGTTATACCCCATATATAG 1728 0.4589 KAYARRQHVWLTGANEVDSKTFTRAILAKTVVCIPLLDGVVEFGTIDKVQEDIKFIQHVKSFFIEHHHGSCPPPPKPALSEHSTSNPASSSDRLIYTVADPPLPPSNNLTNQDNMEEDEEDDDEDDDDEEEEGAPILDSEYETRCNNTHLTSTADASAGIVEPSELMQLEMSEDIRVGSSPNDGSNNLDSNFHLLAVTETNNPSGQVDSYRIDATQRWDSMQDPLGELQVQLPSSSVFPPLEDQILAQEDDHYSQTVSSILQNQSTRWADSPSIACYVTCSNQSAFAKWTAVDPNDHLHAATADGSSQWLLKYILFTVPYLHSNKNNEENNSSPNNTNPTSSAGTDRLRGGGKGSGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQDLEARNRQIEAEPQRSKTPSTTIEVHHSGSSNKEQQQHTAVVVGHEKRKVRIVEGTKTGTKAAVAAAAAEASVQVSIIESDALLELECNHREGLLLDVMLVLRDMKIEVIGVQSSLSNGVFVAELRAKVKENNNSNSGTNGKKVSIVEVKKALNQVIPHI 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242282g00006 575 PANTHER TRANSCRIPTION FACTOR TT8 1 573 - -
Stsc242282g00006 575 SMART finulus 367 416 IPR011598 GO:0046983
Stsc242282g00006 575 MobiDBLite consensus disorder prediction 325 345 - -
Stsc242282g00006 575 MobiDBLite consensus disorder prediction 113 136 - -
Stsc242282g00006 575 MobiDBLite consensus disorder prediction 325 367 - -
Stsc242282g00006 575 MobiDBLite consensus disorder prediction 428 454 - -
Stsc242282g00006 575 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 1 63 IPR025610 -
Stsc242282g00006 575 Coils Coil 400 427 - -
Stsc242282g00006 575 MobiDBLite consensus disorder prediction 67 144 - -
Stsc242282g00006 575 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 432 IPR036638 GO:0046983
Stsc242282g00006 575 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 361 410 IPR011598 GO:0046983
Stsc242282g00006 575 Pfam Helix-loop-helix DNA-binding domain 364 411 IPR011598 GO:0046983
Stsc242282g00006 575 MobiDBLite consensus disorder prediction 424 454 - -
Stsc242282g00006 575 Gene3D - 362 434 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242282g00006 Stsc-Chr242282 28210 32961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242282g00006 1 84 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 68.539 7.35e-32 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc242282g00006 bHLH-MYC_N 2.9e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242282g00006 - - adu:107475781 830.861