Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242281g00003 ATGGGTTTCACTGGAGAATTGGTAAGAAGTGTTTTCTCCAGAAACCGTTCTGCTGCATCATCATATGAAAGCAAAGTTAGGCGAAATTCGGCCGAAAATCGAAGATGGGGTTCTGTTAGGTCATACTTGTGTGGAAATGAATTCAATTCAGTTGTGGCAGAGGAGGATTCAGCTTCACTTAAGAGCTCTGAAGTCACAGTTTCACAAGCAATAATACAAGAGAGTTTGAGTGATAGAGAAGATGCCAAAAGTGAAGAAACTGTGGAGAATGTAATTGAAGAAGAAGAAGAAGAAGAAGAAAGGCCTAATTCAAGTAGCTCTACATTCTTGAGTGAGGAAGAAGCAGCAATTCGGATTCAATCAGCATATAGAAGCTTTCTGTTAAGGCGTCGAAACGATGAAATCAGATCCAATACTGGTGAAGTGGAGCTCAATTTAGTAACTCAAAGTCCAGATAGAAAGTCCATGGGGACATCAGTTGAAGTTCAAACCGCAAATTCGGCTGAAGTTTTCTCGGTTGAAGGCGAAAAAATTAGCATTTACCAGCGTCTTCATCGCAGGACAAAGAGTCATGTAACAAAGCCAAAGAACAGAATGGAGGCAACAACCAGAAGGGAAAGAGCACTAGCTTATGCTTTCTCTCAACAGCTAAGAATCTGTTCAAAGAGAAGACCAACAAAGTGCAACAGCATAGAATCTAATATGAGCTGGAGCTGGCTCGAACGGTGGATGGCAACACGCGTTCCAGACACTGCTGCATTATCTGCTGAAAGCCATGCTTTGAAGCAGCATGATCCTCCTAACAGTACTAATTTCACAATCAAGACAAGATTCTTGGATGCTGCTGCTGGGGAAGAAAAAGAGAGCTGTGGTTCGAATGAAGTGCTGCCTCATTTCGATAGCTATTCAGTAAATTCAATAGAAGAAAATTGTAGCTTCAAATCACAAGAAAAAACCAACTTCAAAGCTAGGAGAACCGTTTCGAGGCGCAAAACAGTGCCAAGCTATCAGTTCCTTGAAGAGCAGCCAAAGGTATGCAAGAAAGAAGGCTCAAACAATGCAAGCAAGTAA 1071 0.4174 MGFTGELVRSVFSRNRSAASSYESKVRRNSAENRRWGSVRSYLCGNEFNSVVAEEDSASLKSSEVTVSQAIIQESLSDREDAKSEETVENVIEEEEEEEERPNSSSSTFLSEEEAAIRIQSAYRSFLLRRRNDEIRSNTGEVELNLVTQSPDRKSMGTSVEVQTANSAEVFSVEGEKISIYQRLHRRTKSHVTKPKNRMEATTRRERALAYAFSQQLRICSKRRPTKCNSIESNMSWSWLERWMATRVPDTAALSAESHALKQHDPPNSTNFTIKTRFLDAAAGEEKESCGSNEVLPHFDSYSVNSIEENCSFKSQEKTNFKARRTVSRRKTVPSYQFLEEQPKVCKKEGSNNASK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242281g00003 356 ProSiteProfiles IQ motif profile. 112 141 IPR000048 GO:0005515
Stsc242281g00003 356 PANTHER IQ-DOMAIN 5-RELATED 32 327 - -
Stsc242281g00003 356 MobiDBLite consensus disorder prediction 15 34 - -
Stsc242281g00003 356 MobiDBLite consensus disorder prediction 76 111 - -
Stsc242281g00003 356 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Stsc242281g00003 356 MobiDBLite consensus disorder prediction 87 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242281g00003 Stsc-Chr242281 23793 25787 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242281g00003 1 337 IQD Protein Family AT5G35670 35.891 7.73e-60 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242281g00003 - - gmx:100807137 438.728