Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242277g00004 ATGGAGGCAAGGGAAGCCATTAGCACCGGGGTTACCGTGATAGGGGCCGAAGCTCCCTCGGCATATCATGTGGCACCAAGGAGTGAAGCTCCGAGCCAAGGTCCTGGCCCGGATGCAGCTGCTAATGCAGTTCTTGGTGTTTCGCCGGTGAGTGTGGGAATGGATGGAACAGCTGTTAAGAAGAAACGTGGTAGGCCTAGGAAATACGGGCCGGATGGGTCTGTTAATATGGCATTGTCACCATTGCCAATTTCTTCTTCGGCTCCTCCTTCCAACGAATTTTCGAGCATGCATTCAAGTGGAAAACGGGGGAAATCGCGCGGTATGGAGCACAAGCACTCGAAGAAATTCGGAGGAGGAGATATTCTTGGAGATTCCATGGGTACAAGCTTTATGCCCCATATCATTACTGTCAATGCCGGCGAGGACATCACGATGAAGGTTATATCTTTTTCTCAACAAGGACCGCGAGCTATATGCATCCTATCTGCAACCGGTGTAATTTCAAATGTTACGCTGCGTCAGCCTGATTCTTCGGGAGGCACTTTGACCTATGAGGGTCGTTTCGAGATACTTTCCTTGACTGGATCATTCATGCCGACCGACAACGAAGGAACAAGAAGCCGGTCAGGTGGTATGAGTGTCACCTTGTCCAGCCCCGATGGCCGGGTCATAGGCGGTGGCGTTGCTGGTCTTCTGGTAGCTGCCAGTCCTGTGCAGGTGGTGGTTGGAAGTTTTCTGCCAAGCAACCAGCAAGATCCAAAACCGAAGAAGCACAAGCATGATTATGCATCACCCGCAGCCTCTACCCCATCCGTTGCAGTGTCCTCTGCTCCGCCGCCCCCTTCAACTAATGGCGATAAAGAGGACGTCATGGGCGGACACATGATGCAACACAATCCCGGAGTCTTCAACTCGAGCCTCACTGCTCCCTCTACATTCCGAAGGGACAGCTGGGTTAACATGCATTCCATGCAGGACTCGATTAAATCCGCCACGGATATTAACATATCTTTGCCTGATAATTAA 1029 0.5151 MEAREAISTGVTVIGAEAPSAYHVAPRSEAPSQGPGPDAAANAVLGVSPVSVGMDGTAVKKKRGRPRKYGPDGSVNMALSPLPISSSAPPSNEFSSMHSSGKRGKSRGMEHKHSKKFGGGDILGDSMGTSFMPHIITVNAGEDITMKVISFSQQGPRAICILSATGVISNVTLRQPDSSGGTLTYEGRFEILSLTGSFMPTDNEGTRSRSGGMSVTLSSPDGRVIGGGVAGLLVAASPVQVVVGSFLPSNQQDPKPKKHKHDYASPAASTPSVAVSSAPPPPSTNGDKEDVMGGHMMQHNPGVFNSSLTAPSTFRRDSWVNMHSMQDSIKSATDINISLPDN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242277g00004 342 FunFam AT-hook motif nuclear-localized protein 1-like 133 264 - -
Stsc242277g00004 342 ProSiteProfiles PPC domain profile profile. 128 267 IPR005175 -
Stsc242277g00004 342 MobiDBLite consensus disorder prediction 55 121 - -
Stsc242277g00004 342 CDD DUF296 133 246 IPR005175 -
Stsc242277g00004 342 MobiDBLite consensus disorder prediction 79 102 - -
Stsc242277g00004 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 315 IPR039605 GO:0003680
Stsc242277g00004 342 Gene3D - 133 262 - -
Stsc242277g00004 342 MobiDBLite consensus disorder prediction 247 298 - -
Stsc242277g00004 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 246 IPR005175 -
Stsc242277g00004 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 249 - -
Stsc242277g00004 342 MobiDBLite consensus disorder prediction 269 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242277g00004 Stsc-Chr242277 11947 15566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242277g00004 10 271 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 55.782 9.94e-96 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242277g00004 - - gmx:100777213 470.7