Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242276g00006 ATGGCGGATAACGGTTCAGGATCATCAGTGGGGGGTGAGACATGGAAGGCTCAGTTGGGGATGTTAATAGTGCCCATGCTCCATGGGGGTTACCATGTGATAACCAAAGTGGTACTCAATGATGGTGTCAACCAAGTAGTTTACTGTGTCTACAGAGATCTCATTGCCCTCTCAATCCTTGCTCCTTTTGCTTATTTCCATGACAAGCAGAGAAGACCACCAATTACTAAGGGTCTACTGATATCATTCTTCTTTGTTGGATTATTTGGGGTAGTTGGCAACCAGCTTTTGTTTGTTATTGGTCTAAGCTTTACTAATCCAGCATATGCTTCTGCCTTAGAGCCAACCGTTCCAGTCTTTACATTTCTGTTTTCTGCAATCATGGGCATAGAAAAAGTGAGCTTGCTGAGGTATGAAGGTGTGGCAAAGGTTGTTGGGACTATTATCTGTGTCTCTGGTGCCATATTGATGGTTCTGTATCATGGTCCAGCTTTTATAGGAAATTCAGAAACAGGAATGCAACATCAGCATGTATCACAAAATGAAACTGGATTGTTAACTGATGGATTGAAGTATATAGGATTAGATCAATTCAGTCTTGGGGTTATATGCATTGTAGGGCACTGCTTATCTATGGGTGCTTATCTAGCCACTCAGGCACAAGTACTGAAAAAATACCCCACAAACATATCTCTCACAGCATATTCATACTTCTTTGGGGTTGTATTGATGGTGATAATAACAATGTTTTTGTCTGATGGGATATCCGACTGGAGTTTGAAGCAATCAGAAATACTTGCTGTTGTTTATGCTGGAATTGTTGCATCAGCCCTTGCTTATGGATTGACAACATGGTGCACCAAGATTTTGGGGCCAATGATGATTGCCCTCTTTAGCTCTCTTCAACCAGCATGTTCTACCTTCCTATCCCTCATTTTCCTTGGTAGTCCTGTTTACTTAGGAAGTATATTGGGAGGAACTTTTATCATTTGTGGCCTATATATTGTTACTTGGGGATCTTATAGAGAAAGACAGAGAAATATTGGAGATATTACTGATGAATCTTGTGCTTCTGATCCACTTATTCAAGAAAAAACAGTGTATTAG 1107 0.4047 MADNGSGSSVGGETWKAQLGMLIVPMLHGGYHVITKVVLNDGVNQVVYCVYRDLIALSILAPFAYFHDKQRRPPITKGLLISFFFVGLFGVVGNQLLFVIGLSFTNPAYASALEPTVPVFTFLFSAIMGIEKVSLLRYEGVAKVVGTIICVSGAILMVLYHGPAFIGNSETGMQHQHVSQNETGLLTDGLKYIGLDQFSLGVICIVGHCLSMGAYLATQAQVLKKYPTNISLTAYSYFFGVVLMVIITMFLSDGISDWSLKQSEILAVVYAGIVASALAYGLTTWCTKILGPMMIALFSSLQPACSTFLSLIFLGSPVYLGSILGGTFIICGLYIVTWGSYRERQRNIGDITDESCASDPLIQEKTVY 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242276g00006 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 157 - -
Stsc242276g00006 368 PANTHER WAT1-RELATED PROTEIN 19 344 IPR030184 GO:0016020|GO:0022857
Stsc242276g00006 368 Pfam EamA-like transporter family 200 337 IPR000620 GO:0016020
Stsc242276g00006 368 Pfam EamA-like transporter family 18 157 IPR000620 GO:0016020
Stsc242276g00006 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 238 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242276g00006 Stsc-Chr242276 29068 31312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242276g00006 100 368 Nodulin-like Gene Family AT5G45370 51.825 3.43e-96 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242276g00006 - - psat:127119930 458.373