Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242276g00004 ATGGCAGCTGGTTCAGGATCAATTATGTGGAAGGCACAGTTGGCCTTGTTAATGACACCCCTCATCTATGGATGTTACCATATTGTCACCAAAGTGGCACTCAATGATGGTGTCAACCAACTTGTCTTCTCTGTCCTCAGGGATCTCATTGCCCTTTCAGTTCTTGCTCCTGTTGCTTATTTCCATGAAAAACAGATGCGACCTCCAATTACTAAGACCCTATTAATGTCATTCTTCTTGCTTGGATTACTTGGGATATTCGCCAACCAGCTTCTGTTTCTTATTGGTTTAAAGTATACTAATGCAACATATGCTGCTGCCACACAGCCAGCCATTCCTGTCTTTACATTTCTGTTTTCTGCAATCATGGGGGTAGAGAAAGTGAACTTGCTAAGATATGAAGGGATGGCAAAAGTTGGAGGAACTATTATCTGTGTCTTTGGTGCCTTGTTGATGGTGTTCTATCGCGGTCCGGTTGTGATAGGAAATGAAGAAATAGTAATGAAAAATGTATCTCAAACTCAAATTGATGGTTTGAAAGATATAGTATTTGATCAATTCAGTCTTGGGGTTATGTGTTTAATAGGAAATTGCATGTGCATGGGTGCTTATCTAGCTATTCAGGCACCAATGTTGAGAAAGTACCCAACAAACATATCTCTCACAGCATATTCTTACTTCTTTGGGACTGTATTGATGGTGATAGCATCAGTGTTCATGACTAATGGGATTACTGACTGGACTCTCACAGGGTCTGAAATTCTTGCTGTTGTTTATTCTGGAATTCTTGCATCTGCCCTTGGTTATGGACTCATTACATGGAGCACTAAGATCTTGGGACCAACCATGGTTGCCCTATATAACTCTCTTCAACCTTTTTGTTCTACTGCCCTTTCCCTAATTTTCCTTGGAAGTGCTGTCTACTTGGGAAGTATATTGGGAGGAACAATTATCATTGTTGGCCTATACATTGTTACTTGGGGATCTTATAGAGAAAGACAAGCAGATGCTAATAATGCTGGAGTTATTCCCAATGAATCTTGTGTGTTAGATCCTCTGATTCAGAAATAG 1071 0.4024 MAAGSGSIMWKAQLALLMTPLIYGCYHIVTKVALNDGVNQLVFSVLRDLIALSVLAPVAYFHEKQMRPPITKTLLMSFFLLGLLGIFANQLLFLIGLKYTNATYAAATQPAIPVFTFLFSAIMGVEKVNLLRYEGMAKVGGTIICVFGALLMVFYRGPVVIGNEEIVMKNVSQTQIDGLKDIVFDQFSLGVMCLIGNCMCMGAYLAIQAPMLRKYPTNISLTAYSYFFGTVLMVIASVFMTNGITDWTLTGSEILAVVYSGILASALGYGLITWSTKILGPTMVALYNSLQPFCSTALSLIFLGSAVYLGSILGGTIIIVGLYIVTWGSYRERQADANNAGVIPNESCVLDPLIQK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242276g00004 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 227 332 - -
Stsc242276g00004 356 Pfam EamA-like transporter family 189 326 IPR000620 GO:0016020
Stsc242276g00004 356 Pfam EamA-like transporter family 12 153 IPR000620 GO:0016020
Stsc242276g00004 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 152 - -
Stsc242276g00004 356 PANTHER WAT1-RELATED PROTEIN 14 333 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242276g00004 Stsc-Chr242276 22304 24178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242276g00004 95 356 Nodulin-like Gene Family AT5G45370 52.190 1.43e-98 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242276g00004 - - psat:127119930 452.981