Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242276g00003 ATGGCTGGATCAGCTTCAGGATCAGGGTCAGGGTCAACGGCTGTGAGTGCTGATGCATGGAAGGCTCATTTAGCCATGGCCATGGTGCAGCTCTTCTATGGTGGATACCATGTCATCACAAAAGTGGCCCTCAATGTTGGTGTCAACGAATTAGTCTTCTGTGTCTTCAGGGATCTCGTTGCCCTTTCTATTCTTGCTCCTGTCGCTTATTTCCATGAAAAGCGTACACGGCCCCCAATCACGAAGCACCTATTGCTGTCATTCTTCGTTCTTGGATTAACTGGGATATTCGGCAACCAGCTTTTGTTTCTTATGGGTTTGAGCTATACTAATCCAACATATGCTTCTGCCATACAGCCAGCCATTCCGGTCTTTACATTTCTGTTTGCTGTAATGATGGGTACAGAAAGAGTTAACTTGCTAAGATACGAAGGTATTGCAAAGATTGGAGGAACTATCATCTGTGTTTTTGGTGCTGTATTGATGGTTTTGTATCGAGGTCCAGCTCTGATAGGATATTCCGATTTAGACCATGTAGCAGTAAATGAAATTAGTGCCAGAGGTCAGCCAGAGCCAGCTGGATGGTTAATTGATGGTTTGCAAGATCTAGGACTAGATCGATTTCATGTTGGGGTTTTGTGTTTGATAGCAAATTGCATGTGCATGGCTGCTTTTTTGGCCCTTCAGGCACCATTATTGAAAAAGTATCATGCACACATATCTCTCACAGCATACTCGTACTTTTTTGGAGCTGTACTGATGGTGATATCATCGATATTCATGACGGATCTATCTGTTGACTGGACTTTAAAGCAGTCAGAAATATTTGCCGTTGTTTATGCTGGAGTTATTGCATCTGCCCTTAATTATGGAATCATTACATGGAGCAACAAGATCCTGGGGCCAGCTTTGGTTTCCCTTTACAATCCCCTCCAACCAGCATTTTCTACCCTCTTGTCTTTAATCTTCCTTGGAAGTGTAATTTACTTGGGAAGTATCTTGGGAGGACTTTTCATCATTGCTGGCCTATATATTGTTACTTGGGGATCTTACAAAGAAAAACAAGCAAATGCTGGAGTTATTCCTATTGCCTCTTGGGTCTCTGAGCCACTTATTCATGAAAAGAATGCATACCAGAAAGGTCACACTATTTCAGGGTCATCTAGCATTACCATTAATCCAAAATCATTGGATTAA 1197 0.4227 MAGSASGSGSGSTAVSADAWKAHLAMAMVQLFYGGYHVITKVALNVGVNELVFCVFRDLVALSILAPVAYFHEKRTRPPITKHLLLSFFVLGLTGIFGNQLLFLMGLSYTNPTYASAIQPAIPVFTFLFAVMMGTERVNLLRYEGIAKIGGTIICVFGAVLMVLYRGPALIGYSDLDHVAVNEISARGQPEPAGWLIDGLQDLGLDRFHVGVLCLIANCMCMAAFLALQAPLLKKYHAHISLTAYSYFFGAVLMVISSIFMTDLSVDWTLKQSEIFAVVYAGVIASALNYGIITWSNKILGPALVSLYNPLQPAFSTLLSLIFLGSVIYLGSILGGLFIIAGLYIVTWGSYKEKQANAGVIPIASWVSEPLIHEKNAYQKGHTISGSSSITINPKSLD 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242276g00003 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 57 164 - -
Stsc242276g00003 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 352 - -
Stsc242276g00003 398 Pfam EamA-like transporter family 210 347 IPR000620 GO:0016020
Stsc242276g00003 398 Pfam EamA-like transporter family 22 154 IPR000620 GO:0016020
Stsc242276g00003 398 PANTHER WAT1-RELATED PROTEIN 24 354 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242276g00003 Stsc-Chr242276 15095 18883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242276g00003 105 376 Nodulin-like Gene Family AT5G45370 61.957 1.18e-121 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242276g00003 - - gmx:100787738 584.719