Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242268g00006 ATGGCAGGAGCTGCACCTGAGGGAACACAGTTTGATGCTCGTCAATTTGATGCTAAGATGAATGATTTACTCACAGCTGATGGACAGGACTTCTTCACATCTTATGATGAAGTGTACGATAGCTTTGATGCTATGGGTTTGCAAGAGAATCTCCTCAGAGGCATTTATGCCTATGGTTTTGAAAAGCCATCAGCTATTCAGCAAAGGGGAATAGTCCCATTCTGCAAGGGACTCGATGTTATTCAACAGGCTCAATCTGGAACTGGAAAAACTGCAACTTTCTGCTCTGGAATCCTGCAGCAACTTGACTACAGCTTGACTGAATGTCAGGCCTTGGTTTTGGCACCAACCCGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGGGCACTTGGAGATTATCTAGGTGTGAAGGTTCATGCTTGTGTGGGAGGAACCAGTGTTCGTGAAGACCAACGCATACTAGCTAGCGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTCTTTGATATGCTGCGCAGACAGTCACTTCAGCCGGATCACATTAAAATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCAAGGGGTTTCAAAGATCAGATATACGATATATTCCAGTTGCTGCCATCTAAGATTCAGGTAGGAGTATTCTCTGCCACGATGCCCCCTGAGGCCCTTGAAATTACTAGGAAGTTCATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGACGAGCTCACTTTGGAGGGTATAAAGCAGTTTTATGTCAATTGTGAGAGAGAGGAATGGAAGCTCGACACACTTTGTGATCTGGACATCATTATGCGGGAGTTCCGATCCGGGTCTTCCCGTGTTTTGATAACAACCGATCTTCTTGCACGTGGTATTGATGTTCAGCAAGTGTCCCTGGTTATAAACTATGATCTCCCTACACAGCCTGAGAACTATCTCCACCGTATCGGTCGTAGTGGTCGGTTTGGTAGGAAGGGTGTTGCGATCAACTTTGTGACGAAGGATGATGAAAGAATGCTGTTTGACATCCAGAAGTTTTATAATGTGCAAATCGAGGAGCTGCCTGCAAATGTTGCTGAACTCCTCTGA 1107 0.4562 MAGAAPEGTQFDARQFDAKMNDLLTADGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNCEREEWKLDTLCDLDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVQIEELPANVAELL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242268g00006 368 SMART helicmild6 254 329 IPR001650 -
Stsc242268g00006 368 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Stsc242268g00006 368 SMART ultradead3 59 256 IPR014001 -
Stsc242268g00006 368 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Stsc242268g00006 368 Gene3D - 261 366 IPR027417 -
Stsc242268g00006 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 364 IPR027417 -
Stsc242268g00006 368 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 202 368 IPR001650 -
Stsc242268g00006 368 CDD SF2_C_DEAD 274 338 - -
Stsc242268g00006 368 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Stsc242268g00006 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 244 IPR027417 -
Stsc242268g00006 368 CDD DEADc_EIF4A 44 242 - -
Stsc242268g00006 368 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Stsc242268g00006 368 Gene3D - 30 251 IPR027417 -
Stsc242268g00006 368 PANTHER RNA HELICASE 36 273 - -
Stsc242268g00006 368 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Stsc242268g00006 368 Pfam Helicase conserved C-terminal domain 276 329 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242268g00006 Stsc-Chr242268 28574 30548 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242268g00006 1 368 Eukaryotic Initiation Factors Gene Family AT1G72730 77.295 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242268g00006 K03257 - gmx:112999960 684.485