Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242267g00001 ATGATAGCAGTTAAATATGCAAGTGGCATCCCTTTAGCTTTGAAAGTTTTGGGATCTTTCTTGCGATCCAAAACTTACAATGAATGGGAGAGTGCATTGGCAAAACTGAAAGCAATTCCCAAAGGAGATATTCAGCAGGAAATGGGTCACACAATTGTTGATGAAGAATCCATTAAGAACCCTGGAGGGCGTAGCAGGTTGTGGAAATCTGAAGAAGTTCGAGACATATTGAAAAATGACAAAGGGACTGATGCAATTGAGACAATATTCTTGGATATGACTCAAGACACGGGCCTATGTATAAGCTCCCAGGCATTTAGGAAGATGCCAAACCTAAGGTTACTTGCTTTTGAAGATAATAAAGCTTCTCAGAGGAACAAGAAGAAGAGAACAAATGAGACATTGGCCCTTCCAACAGATCTTGAATTGCCTAATAACTTGAGATATATTCAGTGGGATGGATGTCCATTGAAATCTCTCACAACTAGTTGTTGGCCTACTAAGCTTGTTGAACTTTCCATGCCATTCAGCAATGTTGAAAAACTTTGGGATGAGAAACAGAATCTGCCAAGTTTAGAGATAATTAACCTTGAATATTCAAGACGCATGAGAGAGTGTCCAAACTTGTCAGGTGCTCCAAATCTAAAACTAGTAAAGCTCACTGGGTGTGAAAGCTTGACTCATGTTCACCCTTCTGTTTTCGGTCTTCCAAAGCTTGAAGGATTAGCTGTATATGGATGCAAAGCACTTACAAGCTTATCAAGTGAATATTGTCCACCCTCTCTTACATCAATTGTTGCCTATGATTGCCCTAATCTGCAAGAGTTCTCAGTCCCAATGTTAGGTGATCATTCTGGAATTCATTTGCATCTGAGGTCAACTGCTTTGACAAAACTACCATCATCAATTTTTCATCTTAAAGACCTTCAACACTTCTCCTTTCCAATTAGTGAGAGCCTTATGGATCTTCCTATAAATTTTGCCTTTCAAATCACACTTTCTGACCCTATTGAGCATAAATATGACACTGCAATCCCCTTACATAGAGTACTACCTAGCCCTGTTTTTCAATCTGTAGTTCGTCTACTCTTTGATAATTGTCGTACTTTAACCGAAATCCCAGATAGCATCTCTTTGTTATCATCATTAGTGCACTTGAATGTTTATAGCTGCACTAATGTCTTAACCTTGCCAGAAAGCCTTAAGTGCCTTCCACGGCTTGAAGTTCTTAACATTTTTCAGTGTCACATGCTTGAACTTATACCGGTTCTTCCACCTTCCCTTAAACGCCTTAGGGTCTGGGATTGTGATCTTCTAAAGACAGTGTTGAGTACAATAAGTGAACCACTCAGAAAAGATGAGGCTACATTTTTGTTCCTAAACTGCAATAATTTGGATGAAGACTCGCATGCTATCATTTTGAAAGATGTTATTCTTAGGACAGAACATGCGGTAGCATCACCATCATCAGGTGAAGAATATCAAAACCAAGAAGAAGGATTCTTTGATTGTGATGCAAAATTTGGTGAGATTTGTTATTTGTTGCCGGTTAGAGGCAGTAATATTCATGACTTGTTTGATGTCCACTCTGCTGAAGCTTATTCGTTTAGTGTTGAACTGCCTCGAGATTCCAATCTAGTTGGTTTCCTCTTCTTCATTGTTCTTTCTCAAGAACAATGGTGTGCCATTGAAGAACAAATATGGTACAATATAAGGGACATGCTAGGCTTTGGTTGTGAATGCTACTTGGAAACAAGTTGGGGTGAAAAGGTTCATGCAGAAAGCTTCTCTTTGTTACAATGGCACTGGGATCAACTCTACCATTATGTTGACATTAGGTCAGATCATGTATTATTATGGTATGACGAGGAATGTTGTAAGAAGATAATGGAACCAATTAGAGGGACAGAAGGAAAAGGCATCAATGATGAGAAGGGTTTCGCTGGCAATAATGCAAATCTTACTCTTGAATTCTTTGCTGGAGTGGTGAATAAATTGGATGCAGTGATACAAGAGTGTGGCATTCGTTGGATATATCAAAATGTGGACGAAGAAGAAGAAGGATCAAGAGGATGCAAATCCGAGAGAAGTAACGAAGAAGCTTATTATGAGGAAGAACTAACACAAAGTTTGCTAGAACCTCCCTTGATCCTTGAAGGAGAAGAAGTAGTAGAGGACTTGAGGCAAAAACTTGAAGAAATTCTGCATATTGGATTTGATATTCGGAAATTTATGTAG 2238 0.3892 MIAVKYASGIPLALKVLGSFLRSKTYNEWESALAKLKAIPKGDIQQEMGHTIVDEESIKNPGGRSRLWKSEEVRDILKNDKGTDAIETIFLDMTQDTGLCISSQAFRKMPNLRLLAFEDNKASQRNKKKRTNETLALPTDLELPNNLRYIQWDGCPLKSLTTSCWPTKLVELSMPFSNVEKLWDEKQNLPSLEIINLEYSRRMRECPNLSGAPNLKLVKLTGCESLTHVHPSVFGLPKLEGLAVYGCKALTSLSSEYCPPSLTSIVAYDCPNLQEFSVPMLGDHSGIHLHLRSTALTKLPSSIFHLKDLQHFSFPISESLMDLPINFAFQITLSDPIEHKYDTAIPLHRVLPSPVFQSVVRLLFDNCRTLTEIPDSISLLSSLVHLNVYSCTNVLTLPESLKCLPRLEVLNIFQCHMLELIPVLPPSLKRLRVWDCDLLKTVLSTISEPLRKDEATFLFLNCNNLDEDSHAIILKDVILRTEHAVASPSSGEEYQNQEEGFFDCDAKFGEICYLLPVRGSNIHDLFDVHSAEAYSFSVELPRDSNLVGFLFFIVLSQEQWCAIEEQIWYNIRDMLGFGCECYLETSWGEKVHAESFSLLQWHWDQLYHYVDIRSDHVLLWYDEECCKKIMEPIRGTEGKGINDEKGFAGNNANLTLEFFAGVVNKLDAVIQECGIRWIYQNVDEEEEGSRGCKSERSNEEAYYEEELTQSLLEPPLILEGEEVVEDLRQKLEEILHIGFDIRKFM 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242267g00001 745 Gene3D - 2 51 IPR042197 -
Stsc242267g00001 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 46 IPR027417 -
Stsc242267g00001 745 PRINTS Disease resistance protein signature 7 21 - -
Stsc242267g00001 745 PRINTS Disease resistance protein signature 187 203 - -
Stsc242267g00001 745 Gene3D Ribonuclease Inhibitor 286 467 IPR032675 -
Stsc242267g00001 745 Gene3D Ribonuclease Inhibitor 69 281 IPR032675 -
Stsc242267g00001 745 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 39 IPR044974 GO:0006952
Stsc242267g00001 745 Pfam Leucine Rich Repeat 168 187 IPR011713 -
Stsc242267g00001 745 SUPERFAMILY L domain-like 89 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242267g00001 Stsc-Chr242267 2932 5819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242267g00001 46 386 WRKY Transcription Factor Family AT4G12020 34.188 2.96e-33 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242267g00001 - - ahf:112777818 1188.33