Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242265g00005 ATGATAATATTATCTAACATCCCGAAGGACGTTCATGAACCATATGCAATCTTTCAAGATGTAGGTTTTGGCGAAAAAACTGGATTATTCAATCACGTGATTTTCTTGAACTGCAGCAAACCAATAAGAGATGATGATTATGGAAGATTCGTGGACGCATCACCTTGCATTGATGGAAAAGGTGATCATCATCATGTTTATGCTGGTGTTAAAGGATTGCAGGTGGCTGAATTAAGAAATGATTGCCGTGTGAGGGTTGCTGCGTCCTCCGTTTTTGGTAGTCTGCACCGAAACTTGTCGTACGGAGAAATCCACCGGAGGCTCAGCTACGGATTTGAACTTTCTTGGATGCTCGGCGGTGCTTGTGCATCTGTTTGTGGGGACCTCAAAACTTGCTTCTTCACCGAAGCCACTCAGAATATCACTTGCCTCGATCTTTGTCACGGTCCAACGCAAGTTGAATGCAGAAAAGTCTCAAAGCTCCAAATCGTCGTTGAAGGATTTCGCAAAGTGGTAGGCAAAGATACTGGCGAGGACTTGTCTAAAAAGGATGTATTATCTGCCATTAAAGTAGGAGTGTTCACGGGAAGGATTCTGATACCTTACATGGCAGTCAAATATACATTGGGTGCTATCTTTTTCTTTGCATTGTTGATCTACACACTTCGAAGAAGGCATCTATCAATTTATGGCAACATTGAAGAATTTTTGCAACACAACACCCTCATGCCAATAAGATATTCGTATAAAGAGATAAAGAAGATGACCGGAGGCTTTAGGGAAAAGTTAGGAGAAGGAGGATTTGGTGCAGTTTACAAAGGGAAGCTAGTAAGCGGGCCCTTTGTAGCCATAAAAATGTTGGGTAAAGCAAAAGAAAGTAACGGCCAAGATTTCATCAGTGAAGTTGCTACAATTGGCAGAATACATCACGAAAATGTGGTGAGATTGATTGGTTTTTGTGTCGAGGGTTCAAAACGCGCTCTGCTATATGAATTCATGCCGAACGGTTCTTTGGATAAGTATATTTTCTCCAAAGAGAATAGTGTCTCTTTAACACAACAGAAGATGTTTGAGATATCTCTTGGAATCGCTCGCGGTATAGCTTATCTACATGAAGGTTGTGATATGCAGATTTTGCATTTTGATATCAAACCTTACAACATCCTTCTTGATGAGAACTTCATTCCAAAGGTCTCAGACTTTGGCCTTGCAAAGCTTTATCCTCTTGACAATAGTATTGTAAATTTAACTGCAGCAAGAGGAACCCTTGGTTACATGGCTCCAGAACTATTCTACCAAAATATTGGAGCAGTGTCTTACAAGGCTGATGTCTATAGCTTTGGAATGCTTCTGATGGAAATAGCAAGTCAGAGAAAAAATACGGTTCCACATCCAGAGCATTCAAGTCAAATTTACTTTCCATATTGGATTTATGATCAGTTGAATCCAGATGCAGAGCATTCAAGCAAAATTAACTATGAAGAAAGCAGTGAAGGAGCAAAAAAAATGTTTATGACTGCATTATGGTGCATACAACTGAAGCCAAGTGATCGTCCTTCAATGAATAAAGTAGTGGAAATGTTAGAAGGAGATGTTGCAAATATTGAATTGCCCCCAAAGCCTACATTTGGGCCGAATGATGTGATTCAAAGAGATTCCAGGATTGACTCAGGAGAAAGTGATTCAAACAATTCTGATGTCTCTTCAAGTTTTGAAGAGGAAAGTACAACCAACCCTTTGTTAAACTTTTCTGGTTGA 1758 0.3999 MIILSNIPKDVHEPYAIFQDVGFGEKTGLFNHVIFLNCSKPIRDDDYGRFVDASPCIDGKGDHHHVYAGVKGLQVAELRNDCRVRVAASSVFGSLHRNLSYGEIHRRLSYGFELSWMLGGACASVCGDLKTCFFTEATQNITCLDLCHGPTQVECRKVSKLQIVVEGFRKVVGKDTGEDLSKKDVLSAIKVGVFTGRILIPYMAVKYTLGAIFFFALLIYTLRRRHLSIYGNIEEFLQHNTLMPIRYSYKEIKKMTGGFREKLGEGGFGAVYKGKLVSGPFVAIKMLGKAKESNGQDFISEVATIGRIHHENVVRLIGFCVEGSKRALLYEFMPNGSLDKYIFSKENSVSLTQQKMFEISLGIARGIAYLHEGCDMQILHFDIKPYNILLDENFIPKVSDFGLAKLYPLDNSIVNLTAARGTLGYMAPELFYQNIGAVSYKADVYSFGMLLMEIASQRKNTVPHPEHSSQIYFPYWIYDQLNPDAEHSSKINYEESSEGAKKMFMTALWCIQLKPSDRPSMNKVVEMLEGDVANIELPPKPTFGPNDVIQRDSRIDSGESDSNNSDVSSSFEEESTTNPLLNFSG 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242265g00005 585 SUPERFAMILY Protein kinase-like (PK-like) 241 529 IPR011009 -
Stsc242265g00005 585 MobiDBLite consensus disorder prediction 535 585 - -
Stsc242265g00005 585 MobiDBLite consensus disorder prediction 560 585 - -
Stsc242265g00005 585 ProSiteProfiles Protein kinase domain profile. 257 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242265g00005 585 Pfam Protein kinase domain 261 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242265g00005 585 ProSitePatterns Protein kinases ATP-binding region signature. 263 285 IPR017441 GO:0005524
Stsc242265g00005 585 SMART serkin_6 257 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242265g00005 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 378 390 IPR008271 GO:0004672|GO:0006468
Stsc242265g00005 585 FunFam serine/threonine-protein kinase PBS1-like 230 332 - -
Stsc242265g00005 585 Gene3D Phosphorylase Kinase; domain 1 232 332 - -
Stsc242265g00005 585 PANTHER RUST RESISTANCE KINASE LR10-RELATED 228 553 IPR045874 GO:0004672
Stsc242265g00005 585 FunFam PR5-like receptor kinase 333 539 - -
Stsc242265g00005 585 Gene3D Transferase(Phosphotransferase) domain 1 333 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242265g00005 Stsc-Chr242265 29481 33899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242265g00005 246 562 Receptor kinase-like Gene Family AT5G38280 48.308 1.13e-96 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc242265g00005 PK_Tyr_Ser-Thr 6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242265g00005 - - adu:110273082 688.723