Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242265g00004 ATGGCTACTGATGGCGATGATATCATGGAATCCAACCTTGTATTCTGCAAAAAGTTGACTCGTCGTGTCTTGCCATTTTCAGTATGTTATACATCGTGGAGTCCATTATACTTGGAATGGTCTGCAAAAACTTTCAATAATGGATGCTTTCTTGCTTGCAAAGTATCCAACAAGGGTGCCGAACTCTATGAATCCATTTTTTTACCCCTTACAGGTGCGTCTTTCCTTGTGGCAATACTAGGTGCCTTGTATGTTATATATAGCTATTACAGAAACAAAGGAGAAGATCAACGAAGAGTTGAAACCTTTTTGAAAGACTACAGAGAATTAAACCCTACAAGATTCTCTTATGCTGATATCAAGAGAATCACAATGCAATTTAAGGACAAGTTAGGTGAAGGAGCTCATGGAGCCGTCTACAAAGGTAAATTGTCCAATCAAATTATTGTTGCTGTCAAGATTCTCAATACCACTGAAGGAGATGGCAAAGAGTTCATAAATGAAGTTGGAACTATGGCTAAAATCCACCATGTCAATGTGGTTCGCTTGCTTGGCTATTGTGCTGACGGATTTCATCGCGCTTTAGTTTATCACTTCTTCCCCAAAGGTAATCTGCAGAGCTTCATTGCACCAGGTGACAATGAAAGCTTCCTCGGATGGAACAAGATGCATCAGATTGCTCTGGGCATAGCCAAAGGGATTGAATATCTTCACCAAGGTTGTGATCAAAGAATTCTACATTTCGACATTAATCCTCGCAATGTCTTGTTAGATGAAAGTCTCACTCCAAAAATTTCAGACTTTGGTTTGGCTAAGTTATGCTCCAAGAATCGAAGTACAGTGTCCATGACTGCAGCCAGAGGAACTTTAGGGTACATGGCGCCAGAAGTTTTCTCTAGAAACTTCGGCAATGTATCTTACAAATCTGATATCTACAGTTACGGAATGTTACTACTCGAGATGGTTGGAGGAAGAAAAAATACAAATGTGAGTGAAGAAACTTTTCAAGTTCTATATCCGGATTGGATACACAGTTTGCTTGAAGGAGATGACACATATATTCCAATTGATGGTGATGGAGATTTTAGAATTGCAAAGAAACTTGCAATAGTGGGACTATGGTGCATCCAATGGCAGCCAGTGCACCGTCCCTCCATGAAGAGTGTAGTTCAAATGCTTGAAGGAGAGGAAGACAATTTGGAAATGCCGCCAAATCCTTTTGAATCTGCTGCTGCCACTGGTTCAAGTGCAGTTATTCCAGCAAGATGCTTGAATTTGGAATTGGAAGCGATTCCAGAAATAGATTAG 1308 0.4029 MATDGDDIMESNLVFCKKLTRRVLPFSVCYTSWSPLYLEWSAKTFNNGCFLACKVSNKGAELYESIFLPLTGASFLVAILGALYVIYSYYRNKGEDQRRVETFLKDYRELNPTRFSYADIKRITMQFKDKLGEGAHGAVYKGKLSNQIIVAVKILNTTEGDGKEFINEVGTMAKIHHVNVVRLLGYCADGFHRALVYHFFPKGNLQSFIAPGDNESFLGWNKMHQIALGIAKGIEYLHQGCDQRILHFDINPRNVLLDESLTPKISDFGLAKLCSKNRSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNVSEETFQVLYPDWIHSLLEGDDTYIPIDGDGDFRIAKKLAIVGLWCIQWQPVHRPSMKSVVQMLEGEEDNLEMPPNPFESAAATGSSAVIPARCLNLELEAIPEID 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242265g00004 435 FunFam PR5-like receptor kinase 200 405 - -
Stsc242265g00004 435 PANTHER RUST RESISTANCE KINASE LR10-RELATED 97 409 IPR045874 GO:0004672
Stsc242265g00004 435 ProSitePatterns Protein kinases ATP-binding region signature. 131 153 IPR017441 GO:0005524
Stsc242265g00004 435 FunFam serine/threonine-protein kinase PBS1-like 93 199 - -
Stsc242265g00004 435 Pfam Protein tyrosine and serine/threonine kinase 126 392 IPR001245 GO:0004672|GO:0006468
Stsc242265g00004 435 SUPERFAMILY Protein kinase-like (PK-like) 106 394 IPR011009 -
Stsc242265g00004 435 Gene3D Transferase(Phosphotransferase) domain 1 200 405 - -
Stsc242265g00004 435 ProSiteProfiles Protein kinase domain profile. 125 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242265g00004 435 Gene3D Phosphorylase Kinase; domain 1 100 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242265g00004 Stsc-Chr242265 27183 29000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242265g00004 105 406 Receptor kinase-like Gene Family AT1G66910 47.419 8.58e-99 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc242265g00004 PK_Tyr_Ser-Thr 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242265g00004 - - adu:107495716 750.355