Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242265g00003 ATGGTGATGAGAAGAGGAAAGGGCTTCTTGCTGCTCATGATATTATTGCAACAAATTTTAAGTTGCAGAGGAGGAGGAGGAGGATGTAAGCCATCCTCTTGTGGCAAAATCAGCAACATAAAGTATCCTTTCCGGCTGAAGAATGATCTCATAAACTGTGGTGATCCGAGATACGAGTTGTCTTGTGAGAATAACATCACCCTCTTACAACTTTTCCCGGGTAGAAGCTACCATGTGAAGGGAATAAACTACAACAACTTCACGATCCGGCTTGTAGATCCCGCCATCACAGAGAATGACTGTTCTACCCTTCCTCACTTTTCTTTATCCCGTTCCAATTTCAGTGACAGTTACGGTTACATAAGAACCCTGACCCCCAAAGACGTAAATGAACCATATGGAACCTTTCAAGAGCGAGGTTTCGTTAATGGCTCCACATGGGAGGAAGGCCAAATAAGCGTATTCGAGCACGTGACTTTCTTGAAGTGCAGCAATCCGGTGAGGGACGATCCACTATTCGTGGACACTGCCCCTTGCATTAAGAGAAGTGATCATGATCATGTTTATGCTGTTGTTGGAGGATTGCAGGTGGTTGAGTTAAGAGATGATTGCAGTGTGAAGATGGTTGCTGTCTCATCATTTCTTCCTCATCACCGAAACTTGTCATCATACGCTGAAATTCATAGGAGACTCAGCTACGGATTTGATCTTTCCTGGATGTTTGCCGGTGCTTGTGCATCTGTTTGTGGGGAGATGAGTTCTTGCCTTTTCAACGAAACTGATCAAAATCTCACTTGCGGCGATTTCTGTCGCGATACAACGAGCCTGGAATGCAGATTCCGCCAAGTAGTAGGTAAAGATACCGGCGAGGTTTTGTCTGAAAAGGATGTATTAGCTGCCATTAAAGTAGGAGTGTTCACGGGAAGGTTTCTGATGCCTTACATGTTTGTTAAATATACATTGGGTGTTATCTTTTTCTTTGCATTGTTGATCTACACATTTCGAAGAAGGCATCTTTCAATTTATGGCAATATTGAAGACTTTCTGCAACACAACACCCTCATGCCAATAAGATATTCATATAAGGAGATAAAGAAGATGACCAGAGATTTTAAGGAAAAGTTAGGAGAAGGAGGATTCGGTGCAGTTTACAGAGGGAAGCTAATAAGCGGGCCCTTTGTAGCCATAAAAATGTTGGGTAAAGCCAAAGGAGGTAACGGCCAAGATTTCATCAGTGAAGTTGCTACAATTGGAAGAATACACCATGCCAATGTGGTGAGGTTGATTGGTTTTTGTGTCGAGGGTTCAAAACGCGCTCTGGTATATGAATTCATGCCGAATGGTTCTCTAGATAAGTATATTTTCTCCGAAGAGAAAGGTGTATCTTTAACATATCAGAAGATGTTTGAGATATCTGTGGGAGTGGCACGAGGTATGGCTTATTTGCATGAAGGCTGTGACATGCAGATTTTGCATTTTGATATCAAGCCTCACAACGTCCTTCTTGATGAGAACTTCATTCCAAAGGTCTCAGACTTTGGTCTTGCAAAGCTATATCCTCTTGATAATAGTATTGTAACTTTGACTGCGGCGAGAGGAACAATTGGTTACATGGCTCCAGAACTGTTCTATCAAAATATTGGAGCAGTGTCTTACAAGGCTGATGTCTATAGCTTCGGAATGCTTTTGATGGAAATAGCAAGCCAGAGAAAAAATATGAATTCACATGCAGAGCATTCAAGCCAACTTTACTTTCCATTTTGGATTTATGATCAGTTGGCTGCAAAGGAAAATTATGAGATAGAGATGGAAACTTTTAATGACGAAGAAAGGAGTGAACTGGCAAAAAAGATGTTTCTAACTGCATTATGGTGTATACAATTGAAGCCAAGTGATCGTCCTTCAATGAATAAAGTAGTGGAAATGTTAGAAGGAGATATTGCCAATATTGAAATGCCCCCAAAACCTTCATTTTATCCAAATGATGTGATTCAAAGAGAATCCAAGATTGACTCAGGAGAAAGTGATTCAAACAATTCTGATCTCTCGTATAGTTTTGAAGAGGAAAGTACAACCAACCCTTTGTTAAAGTTTTCTGGTTGA 2103 0.4094 MVMRRGKGFLLLMILLQQILSCRGGGGGCKPSSCGKISNIKYPFRLKNDLINCGDPRYELSCENNITLLQLFPGRSYHVKGINYNNFTIRLVDPAITENDCSTLPHFSLSRSNFSDSYGYIRTLTPKDVNEPYGTFQERGFVNGSTWEEGQISVFEHVTFLKCSNPVRDDPLFVDTAPCIKRSDHDHVYAVVGGLQVVELRDDCSVKMVAVSSFLPHHRNLSSYAEIHRRLSYGFDLSWMFAGACASVCGEMSSCLFNETDQNLTCGDFCRDTTSLECRFRQVVGKDTGEVLSEKDVLAAIKVGVFTGRFLMPYMFVKYTLGVIFFFALLIYTFRRRHLSIYGNIEDFLQHNTLMPIRYSYKEIKKMTRDFKEKLGEGGFGAVYRGKLISGPFVAIKMLGKAKGGNGQDFISEVATIGRIHHANVVRLIGFCVEGSKRALVYEFMPNGSLDKYIFSEEKGVSLTYQKMFEISVGVARGMAYLHEGCDMQILHFDIKPHNVLLDENFIPKVSDFGLAKLYPLDNSIVTLTAARGTIGYMAPELFYQNIGAVSYKADVYSFGMLLMEIASQRKNMNSHAEHSSQLYFPFWIYDQLAAKENYEIEMETFNDEERSELAKKMFLTALWCIQLKPSDRPSMNKVVEMLEGDIANIEMPPKPSFYPNDVIQRESKIDSGESDSNNSDLSYSFEEESTTNPLLKFSG 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242265g00003 700 SUPERFAMILY Protein kinase-like (PK-like) 354 644 IPR011009 -
Stsc242265g00003 700 SMART serkin_6 369 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242265g00003 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Stsc242265g00003 700 FunFam serine/threonine-protein kinase PBS1-like 343 444 - -
Stsc242265g00003 700 MobiDBLite consensus disorder prediction 675 700 - -
Stsc242265g00003 700 MobiDBLite consensus disorder prediction 658 700 - -
Stsc242265g00003 700 Pfam Wall-associated receptor kinase galacturonan-binding 29 93 IPR025287 GO:0030247
Stsc242265g00003 700 Gene3D Phosphorylase Kinase; domain 1 345 444 - -
Stsc242265g00003 700 FunFam PR5-like receptor kinase 445 655 - -
Stsc242265g00003 700 Pfam Protein tyrosine and serine/threonine kinase 371 643 IPR001245 GO:0004672|GO:0006468
Stsc242265g00003 700 ProSiteProfiles Protein kinase domain profile. 369 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242265g00003 700 PANTHER RUST RESISTANCE KINASE LR10-RELATED 340 664 IPR045874 GO:0004672
Stsc242265g00003 700 Gene3D Transferase(Phosphotransferase) domain 1 445 657 - -
Stsc242265g00003 700 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242265g00003 Stsc-Chr242265 22791 26682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242265g00003 11 659 Receptor kinase-like Gene Family AT5G38260 36.183 1.44e-111 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc242265g00003 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242265g00003 - - adu:110273082 880.937