Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242265g00001 ATGGCCTGCGAGAGCTGTGGCTGTGAAGGGAACTTGAATGTGAGAAAGCCTCAGTTCTATGAGTTCTATTCTTCCACTCCTGAGAAGCTGAAAATTCCTGCTGCATTCATTCATCACTTGCAGGGCAGGGCAGATGGCTTAGTTTCAGTAACAGGTCCTAGTGGAAAATCTTGGTCAGTTCAATTGATTATGATGGAAAACGATATGTTCTTCCATCAGGGATGGCCATCGTTTGTGAGAGATCATCGTCTGGAATGCGGTGATCTTTTGGTTTTCAGATATGAAGGTTACCTGAATTTCACCGTGCAAGTATTTGATAAGAATAAATGTGAAAAAGTGGGATTTAATTATGAATGCAGTCAAAATTCAGGCATCTTCAATAACGCAAGAGGCCAAAAGAGAGATAGGAATGAGAAATCCTCTCTGGATGTTATTGTGGAAGGGGCTACAAAGAAAATGAGAGGCAACAATGCCGACAACCAGGAACTTCAGCTGAGCATAGTTGGTAAAGACATATTGCAATATGAGTTGGTAAAACCTATTAGTATGATCAAAGAAAAAGAAGAAACTTCGAGAGCATGTTCAGCTAATGACATCCCATTGCCTTTTCATGTGGAAAATAGCAATGAAGATGAAGATGCTGAACAATATATTCTGAATGGTATTTCACTATCAAACTTACCAGCACATGATGAGAAAAAAGTAGCTCGATCATTTACTTCATCTTTTCCATATTTTGTAAGGATCATGAAGAGCTTCAATGTTGGCGGTTCATATACTCTGAATATCCCGTATCAATTTTCTATGGCACATCTCCCAAACTGCAAGATAAAGATTATCCTTCATAATATGAAAGGAGAACATTGGACTGTTAATTCTGTGCCAACAACAAGAGTGCATACAAGTCACACTCTCTGTGGAGGATGGATGGCTTTTGTGCGTGGCAATAACATAAAGGTTGGAGATCTCTGCATTTTTGAACTTGTACATGAGTGTGAATTACTTGTTCGTATTGCTGGAGCTGGAAAAGATCTACAAGACCCAGTTGCGAAGCCAGATTTAAGTAACCCGATGGCTTCAAGATATATGCCGGTGAATCCTAAAGTCAGCCCAAAAAGCACAAGAAATGTTGATCAATCGGTTAAAAAGCGGTCAAGGGTTGGTCAAGAAGCTGCTTTTTCCAATGAATCAACGAAATCTGGTAAAACATCAAATTCTTCTAAGAAAACAACGGGGCTTGGCAATCGGACAAAAGCTGCCAATAAAAAGTTGGAGACAGCTGCTCAGAAGAGGCATCGTGTGGAAGATGAACTAAGCTCACAAGCTAATGCTGGCTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTGGCTCAAGCCTTTACTTCCCCTTTTCCTAACTTTGTGAAAATCATGAAGAAGTTCAATGTCAGCGGATCATACACTTTGAAAATCCCATACCAGTTCTCCGCAGCACATCTCCCTGCCTACAAAACAGAAATTGTTCTTCGAAATTTAAGAGGTGAATGTTGGACTGTGAACTCTGTCCCAGACGCAAAGGGCAGAACGGTGCATACCTTTTGTGGTGGATGGATGGCCTTTGTTCGCGATAACGATATCAATTTCGGGGACACGTGCATATTTGAACTCGTTGCTCAGAGTGAGATGCGAGTTTATATATCTGGGGTGGGCAAGGAAGGTCTTGAACATCAAAACGGTCAATTGAAGCTTAACAGATTAGCCAATGTTCCATCTACCTGCTAA 1764 0.4093 MACESCGCEGNLNVRKPQFYEFYSSTPEKLKIPAAFIHHLQGRADGLVSVTGPSGKSWSVQLIMMENDMFFHQGWPSFVRDHRLECGDLLVFRYEGYLNFTVQVFDKNKCEKVGFNYECSQNSGIFNNARGQKRDRNEKSSLDVIVEGATKKMRGNNADNQELQLSIVGKDILQYELVKPISMIKEKEETSRACSANDIPLPFHVENSNEDEDAEQYILNGISLSNLPAHDEKKVARSFTSSFPYFVRIMKSFNVGGSYTLNIPYQFSMAHLPNCKIKIILHNMKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDLCIFELVHECELLVRIAGAGKDLQDPVAKPDLSNPMASRYMPVNPKVSPKSTRNVDQSVKKRSRVGQEAAFSNESTKSGKTSNSSKKTTGLGNRTKAANKKLETAAQKRHRVEDELSSQANAGLRMLFALDEQRVAQAFTSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEIVLRNLRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQSEMRVYISGVGKEGLEHQNGQLKLNRLANVPSTC 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242265g00001 587 Pfam B3 DNA binding domain 468 558 IPR003340 GO:0003677
Stsc242265g00001 587 Pfam B3 DNA binding domain 27 108 IPR003340 GO:0003677
Stsc242265g00001 587 Pfam B3 DNA binding domain 246 338 IPR003340 GO:0003677
Stsc242265g00001 587 CDD B3_DNA 29 106 IPR003340 GO:0003677
Stsc242265g00001 587 SMART B3_2 468 564 IPR003340 GO:0003677
Stsc242265g00001 587 SMART B3_2 246 342 IPR003340 GO:0003677
Stsc242265g00001 587 SMART B3_2 22 108 IPR003340 GO:0003677
Stsc242265g00001 587 SUPERFAMILY DNA-binding pseudobarrel domain 28 110 IPR015300 -
Stsc242265g00001 587 CDD B3_DNA 244 338 IPR003340 GO:0003677
Stsc242265g00001 587 ProSiteProfiles B3 DNA-binding domain profile. 246 342 IPR003340 GO:0003677
Stsc242265g00001 587 Gene3D - 229 341 IPR015300 -
Stsc242265g00001 587 Gene3D - 453 563 IPR015300 -
Stsc242265g00001 587 Gene3D - 11 110 IPR015300 -
Stsc242265g00001 587 MobiDBLite consensus disorder prediction 390 417 - -
Stsc242265g00001 587 CDD B3_DNA 466 560 IPR003340 GO:0003677
Stsc242265g00001 587 ProSiteProfiles B3 DNA-binding domain profile. 468 564 IPR003340 GO:0003677
Stsc242265g00001 587 Coils Coil 417 437 - -
Stsc242265g00001 587 SUPERFAMILY DNA-binding pseudobarrel domain 461 562 IPR015300 -
Stsc242265g00001 587 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 29 345 IPR044837 -
Stsc242265g00001 587 SUPERFAMILY DNA-binding pseudobarrel domain 239 340 IPR015300 -
Stsc242265g00001 587 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Stsc242265g00001 587 MobiDBLite consensus disorder prediction 346 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242265g00001 Stsc-Chr242265 15162 18831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242265g00001 16 340 B3 DNA Binding Superfamily AT3G18990 21.512 4.60e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc242265g00001 B3 2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242265g00001 - - adu:107495829 958.362