Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242264g00005 ATGTTTGAAGAGCAAGAGATTGAGATCCCTAGGCAGATAGGGTTGGTTCCTCCTCTCCCATTTGGAACCTTTGAATCTTTCAATAATAAAGCTTTACTGCCTACCATAGCTGATCCTCTTCCACCGCCGCTGCCGCCGCCGCATCTCGTCACTTCTTCTTGTTTGGGAGGAGCACATCAACTCCTTTCATTCAACAGATCCACTGCAAACAGTAATAATTCATGGGCAAGGGGAGAGGTAACAACAGCAGGAGATTGCATGATGATGATGATGATGAGGATGAGTAACAAAAGAAGTGGAGGTGGAGGAGGAGATATTGCAGCGGCGATGAAGATGAAAATAAAGAAGATGAAAGGGGGCAGTGGGAGAGGAAGAAGAAAGGTGAGAGAGCCTAGGTTTTGCTTCAAGACCATGAGCGATGTGGATCTCCTTGATGATGGCTACAAATGGAGAAAGTACGGTCAGAAAGTTGTCAAGAACACACAACACCCCAGAAGCTACTACCGTTGCACAGAAGAAAAGTGTAGAGTGAAGAAACAAGTGGAGCGGTTAGCTGAGGATCCAAGGATGATTATAACTACATACGAAGGAAGACATGTTCATTCTCCCTCTAACGACCTCCAAGACTCTGAAACTGCTTCTCAACTCACCGATTTCCTATGGTAG 666 0.4565 MFEEQEIEIPRQIGLVPPLPFGTFESFNNKALLPTIADPLPPPLPPPHLVTSSCLGGAHQLLSFNRSTANSNNSWARGEVTTAGDCMMMMMMRMSNKRSGGGGGDIAAAMKMKIKKMKGGSGRGRRKVREPRFCFKTMSDVDLLDDGYKWRKYGQKVVKNTQHPRSYYRCTEEKCRVKKQVERLAEDPRMIITTYEGRHVHSPSNDLQDSETASQLTDFLW 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242264g00005 221 ProSiteProfiles WRKY domain profile. 139 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc242264g00005 221 FunFam WRKY transcription factor 57 130 204 - -
Stsc242264g00005 221 Pfam WRKY DNA -binding domain 145 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc242264g00005 221 SMART WRKY_cls 144 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc242264g00005 221 Gene3D WRKY domain 131 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc242264g00005 221 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 101 204 IPR044810 GO:0003700
Stsc242264g00005 221 SUPERFAMILY WRKY DNA-binding domain 136 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242264g00005 Stsc-Chr242264 23110 25639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242264g00005 106 221 WRKY Transcription Factor Family AT4G39410 66.116 1.41e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc242264g00005 WRKY 5.7e-25 CL0274