Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242259g00004 ATGGATATGGAATCATGTGTGCCTCCGGGGTTTAGATTTCACCCAACAGAAGAAGAACTTGTGGGGTATTACCTCAAGAGGAAGATTAATTCCCTCAAAATTGATCTTGATGTTATAGTTGAGATCGATCTCTACAAAATGGAACCATGGGACATACAAGATAAATGCAAGCTAGGATATGAGGAACAAAATGAGTGGTACTTTTTCAGCCACAAAGACAAGAAGTACCCAACAGGAACAAGAACTAACAGAGCAACTGCTGCTGGATTCTGGAAAGCAACTGGGAGGGACAAGGCTGTTATGTCAAAGAACAGGATCATTGGTATGAGGAAGACTTTGGTCTTCTACAAAGGACGTGCGCCTAATGGCAGGAAAACTGATTGGATCATGCATGAATACAGGCATCAAACCTCTGAACATGGCCCTCCTCAGGAAGAAGGATGGGTTGTGTGTAGAGCATTTAGAAAACCAAGTCCAAGTCATCATCAAAGGCAACTAGGTTTTGATCCATGGTGTAGTAGTAATCAAGCACATTATTTCAGAGATCAAAGTAGCAGCTATGGTGGTGATCATGGAAGGCCCTTATCAATCACAGATATTCTAACTTCCCAAACCCATCATCATCTTCATCATCATTTGATGAATAATCACCCTACTGAAGGCACAAATTTTAGTCATTCCTTTGGTTCGGATCATCATCATCAACAACAAGAACAATTTCTAATATCAAATAATAATAATCATCATCAACAACTCATTGAGCTTCCACAGCTAGATAGCCCTACTAGTATTGCACTCAAAGAATCATCACCCATTAATAATAACAATGAAGAGTATTGCAGTGATGAGAGGAACAACAACAACAATGGTGGAGGACAACAAGGAATAATTGATTGGAAAAGCTTGGATAACTTGTTTGCTGATACTTCTAGTTACTTCTCAAATCCAAACATGTCTCAATTCATGACCATGATACCACAACAACAACAACCTCATAATAATCATCATCATCTAGGTTGTTTCCCTGATTCATAA 1035 0.3903 MDMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDKCKLGYEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHHQRQLGFDPWCSSNQAHYFRDQSSSYGGDHGRPLSITDILTSQTHHHLHHHLMNNHPTEGTNFSHSFGSDHHHQQQEQFLISNNNNHHQQLIELPQLDSPTSIALKESSPINNNNEEYCSDERNNNNNGGGQQGIIDWKSLDNLFADTSSYFSNPNMSQFMTMIPQQQQPHNNHHHLGCFPDS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242259g00004 344 FunFam NAC domain-containing protein 16 160 - -
Stsc242259g00004 344 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Stsc242259g00004 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 262 - -
Stsc242259g00004 344 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Stsc242259g00004 344 Pfam No apical meristem (NAM) protein 8 134 IPR003441 GO:0003677|GO:0006355
Stsc242259g00004 344 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242259g00004 Stsc-Chr242259 14605 17870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242259g00004 3 344 NAC Transcription Factor Family AT1G71930 55.182 1.91e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc242259g00004 NAM 5.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242259g00004 - - gmx:100812904 471.47