Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242259g00001 ATGCAGAAGAATAATCCTGCAGCAAAATCATCATGTTCAAAAGGCAGTAACACTGTGCTGCCACATCAAACCCCAAGATTAAGGGACCATTACCTTCTTGGGAAGAAGCTTGGTCAGGGGCAATTTGGTACAACATACCTCTGCACACAGAAATCCTCAGGGAAGCTCTATGCCTGCAAATCAATCCCAAAGAGGAAGCTTCTTTGCCAAGAAGACTATGAGGATGTGTGGAGGGAGATTCAGATCATGCACCATTTGTCAGAGCATCCAAATGTGGTGCAGATTCAAGGGACCTATGAGGATTCTGTGTTTGTGCACATTGTCATGGAGCTTTGTGCAGGGGGTGAGCTCTTTGATAGGATCATACAGAAGGGTCATTACAGTGAGAGAGAGGCTGTCAAGTTGATAAAGACCATTGTTGGTGTTGTTGAGGCTTGTCACTCTCTTGGTGTCATGCATAGGGACCTCAAGCCTGAGAATTTTCTCTTTGATACCCCTAATGAAGATGCCAAGATGAAGGCCACTGATTTTGGCCTCTCTGTCTTCTACAAGCCAGGACAGACTTTCCATGATGTAGTCGGAAGTCCCTATTATGTTGCCCCTGAGGTCTTGTGCAAGCAATATGGACCCGAAGTGGATGTATGGAGCGCTGGCGTTATCCTTTACATCTTATTGAGTGGAGTCCCGCCTTTCTGGGCTGAAACCGAGTCTGGAATTTTCAAACAGATTTTACACGCGGAACTGGATTTTGTATCTGAACCGTGGCCAAGTATCTCAGAAGGTGCTAAAGATTTGGTAAAAAGGATGCTGGATAGGGATGCCAAGAAAAGAATTACTGCTCATGAAGTCTTATGCCATCCTTGGATTGTTGATGAGGAAAATGCACCTGACAAGCCTTTGGATTCTGCTGTTTTGACACGGTTGAAGCATTTCTCAGCGATGAATAAACTTAAGAAGATGGCACTGCGGGTCATAGCCGAAAGACTTTCCGAGGAAGAAATAGGTGGGTTGAAGGAGCTATTTAAAATGATCGACACAGACAACAGTGGGACAATTACATTCGAGGAACTCAAGGATGGGTTGAAAAGTGTGGGATCCAATCTCATGGAATCTGAAATTAAATCCCTTATGGAAGCGGCTGATATAGACAACAGTGGAACAATCGATTATGGCGAATTTCTTGCTGCTACATTGCATTTGAATAAGATGGAGAGGGAGGAGAATTTGGTCGCGGCTTTTGCCTACTTCGATAAAGATGGTAGTGGTTACATTACCATTGATGAGCTTCAACAGGCTTGTAAAGACTTCGGCCTAGGTGAGGTACATCTGGACGAAATGATCCAAGAGATTGATCAAGACAATGATGGGAGAATTGATTATGGGGAGTTTGTGGCTATGATGAAAAAGGGTGATCCAGATGTGGGGAGGAGCAGAACCCTGAAAGGCAATTTGAACTTCAATATTGCAGATGCATTTGCAGTGAAAGAATAG 1491 0.442 MQKNNPAAKSSCSKGSNTVLPHQTPRLRDHYLLGKKLGQGQFGTTYLCTQKSSGKLYACKSIPKRKLLCQEDYEDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHIVMELCAGGELFDRIIQKGHYSEREAVKLIKTIVGVVEACHSLGVMHRDLKPENFLFDTPNEDAKMKATDFGLSVFYKPGQTFHDVVGSPYYVAPEVLCKQYGPEVDVWSAGVILYILLSGVPPFWAETESGIFKQILHAELDFVSEPWPSISEGAKDLVKRMLDRDAKKRITAHEVLCHPWIVDEENAPDKPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKDGLKSVGSNLMESEIKSLMEAADIDNSGTIDYGEFLAATLHLNKMEREENLVAAFAYFDKDGSGYITIDELQQACKDFGLGEVHLDEMIQEIDQDNDGRIDYGEFVAMMKKGDPDVGRSRTLKGNLNFNIADAFAVKE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242259g00001 496 CDD EFh 337 396 IPR002048 GO:0005509
Stsc242259g00001 496 Gene3D Phosphorylase Kinase; domain 1 32 116 - -
Stsc242259g00001 496 FunFam CDPK-related kinase 3 23 191 - -
Stsc242259g00001 496 SUPERFAMILY EF-hand 328 468 IPR011992 -
Stsc242259g00001 496 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Stsc242259g00001 496 SMART efh_1 372 400 IPR002048 GO:0005509
Stsc242259g00001 496 SMART efh_1 408 436 IPR002048 GO:0005509
Stsc242259g00001 496 SMART efh_1 336 364 IPR002048 GO:0005509
Stsc242259g00001 496 SMART efh_1 442 470 IPR002048 GO:0005509
Stsc242259g00001 496 FunFam Calcium-dependent protein kinase 1 33 116 - -
Stsc242259g00001 496 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Stsc242259g00001 496 ProSiteProfiles Protein kinase domain profile. 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242259g00001 496 Gene3D Transferase(Phosphotransferase) domain 1 117 313 - -
Stsc242259g00001 496 FunFam Calcium-dependent protein kinase 1 297 471 - -
Stsc242259g00001 496 CDD STKc_CAMK 30 288 - -
Stsc242259g00001 496 ProSiteProfiles EF-hand calcium-binding domain profile. 442 473 IPR002048 GO:0005509
Stsc242259g00001 496 CDD EFh 409 468 IPR002048 GO:0005509
Stsc242259g00001 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Stsc242259g00001 496 SUPERFAMILY Protein kinase-like (PK-like) 27 298 IPR011009 -
Stsc242259g00001 496 Gene3D - 314 472 - -
Stsc242259g00001 496 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Stsc242259g00001 496 FunFam Calcium-dependent protein kinase SK5 199 294 - -
Stsc242259g00001 496 SMART serkin_6 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242259g00001 496 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
Stsc242259g00001 496 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 463 - -
Stsc242259g00001 496 Pfam EF-hand domain pair 337 397 IPR002048 GO:0005509
Stsc242259g00001 496 Pfam EF-hand domain pair 407 468 IPR002048 GO:0005509
Stsc242259g00001 496 MobiDBLite consensus disorder prediction 1 22 - -
Stsc242259g00001 496 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Stsc242259g00001 496 Pfam Protein kinase domain 33 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242259g00001 496 ProSiteProfiles EF-hand calcium-binding domain profile. 332 367 IPR002048 GO:0005509
Stsc242259g00001 496 ProSitePatterns EF-hand calcium-binding domain. 345 357 IPR018247 -
Stsc242259g00001 496 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242259g00001 Stsc-Chr242259 3011 6791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242259g00001 8 494 EF-hand Containing Proteins AT1G35670 82.957 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc242259g00001 Pkinase 2.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242259g00001 K13412 - gmx:547887 895.575