Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242258g00004 ATGTTGTGGCATAGGAAGCATGATGTGTTCCTCAGCTTTAGAGGGGAAGACACACGCAACGGCTTTACCACTCATCTTTACGCAGCCTTATCCGCTAAAGGGATCAACACTTACATGCATCACATGCTTGCTGCCTCTGATGATGGAGCACAAGAGAAGCAAGCAATACAAGAATCAAATATCTATCTCATCATTTTCTCTCAACACTATGCCTATTCCGCACGCTGTTTGGACCAACTCACACACATTCTGGATTGCAAGCACAGATATGGAAAGGATGTCATACCTGTTTTCTATAAGATGGATCCGTCAATTGTTAGGAATCAAACAGGCACATATGCTGATGCCTTTCTTAAGCATCAACAAACATTTGGAGATCAAGTGCAGAGGTGGAAGCTTGCCCTAACTCAACTTGCTGGATCATCGCCCACTCATTCAAAAATAAATAGTGCCAGGCCTGATCACATACTTGTTGAAGAAATTGTTCAACACATTTGGAGGAGATTGAAACGCAATTACTCAACTGATTACCAAGGACTGGTTGGAATTCAAGACCATGTTACACAGATCCAGTCCTTGTTGCATGTTGAGTTAGAAGCCGTTCGGATCATAGGAATATGCGGAATTGGAGGAATAGGTAAGACAACCATTGCTGGAGCCTTGTATCATGAATTGTCATCCCAATTCAGTTTCAGCACTTTTGCTCTAAGTGTTCAACAACAAATAGAAAGCCATGGGATGCAACATACACAATGCAAATATATATCAGAGCTTCTAGAAGAAAAAATTCCCGCAGACAATTTGGGATTGAGTGTGTTAACAGAAAAGCTTAGAGTGTCCAAGGTTCTCCTCATTCTTGATGATATGAACAATTCAGCTCAAATAAGAGATTTGATTGGAGGACATGGTAGCTTCGGCCCGGGAAGTAGGATCATTGTGACAAGTAGGGACATGCAAACGCTCAAGAATGCTGGGGTTGATGAGATATATGAAGCTAAGGAGATGAACTTTCAAGATTCCCTTCAACTATTCAGTTTGAATGCCTTCAAACAAAAGACTCCAATAGAAAATTATGTGAGCTTATCAAGAAAGGTGTTAAATTACGCAAAGGGGATTCCATTGGCTCTCAAAGTTTTAGGCTCAATGCTTCATGGCAGCACAGAGGGAGAATGGGAATGTGTATTGCAAAAGCTTGAAAAGATTTCCAATCCTGAAACTTATAATTTGTTGAAACTGAGTTATGATGGGCTTCGTGAAGAACAGAAGGATATGTTTCTTGACATAGCTTGCTTCTATAAAGGAGGTCATGATGTGAATACTGTAAAACAAGCATTTGATAGCTGTGGTTCCAATGCTGCTACTGGACTGAGAGTTCTCAGTGATAGAGGCCTCATATCTGTGTTGAGAGGTGAACTAATGATGCATGATCTAATACAGGAAATGGGCCAAGAAATTGTTCATAACGAGTATGCTGGTGAACCTGGAAAACACAGTCGATTATGGAAGCATGATGACATTTATCATGTTCTAAGAGAAAACAAGGGGACAGATGCTGTCCAATGTGTATTTCTTGACATGTGCCAAATCAAAGAAGTTCAACTACATTCTCAAACTTTCAAAATGATGCATAATCTGAGACTGCTACAATTCTATAAGTCTAGGCCAAATCAAGACTTAAAAGTGCACCTTCCTGCATTTCTTGATAGTCTTCCAGATAGTTTACGGTTTCTCTGTTGGAATGGCTTCCCTCAAAGATCTTTGCCACAAGACTTTTGCCCCAAAAATCTTGTTATACTCGACATGTGTGATAGTCATCTTGAACAACTCTGGGAAAAGGATCAGAAGTTACCAAATTTGAAAAGACTTGACCTCAGCGGTTCCAAGAACCTTGTTCAAGTACCAGATCTTTGCCACTGCCCAAATATTGAAGAAATAATTCTTAGCCACTGCAAAAGCTTGGTTCAAGTTTACTCCTCGGGTTTCCTTAACAAGCTTAACTGTGTATGGCTAAATGGCTGCACTGAGCTTAGAAATGTAAACCTTCCAAGCAACATTCTGTCAAAATCTTCAGGATTAATAGTTCTCAATGACTGTACCAACCTTGAGTTGTTTTCAATGGAAATCACCGCAAAGGATGTTGTGTTACATGGTTGTCCCCGCAGTAGATCAATAGAAAGTCTCTTCAGAAACTGCTTGCCAGGGGACATGATTCGGTGTACAATGGGAAGAAGAGGAGGGTCCTTATTTGAGAGGTTTTCTGACACTTTTGACCCCATTGGGGATCCTGCGCCTAATCTAGGTGATGAACCAAAGAATAATATACACTTACTAAACTTGAAAGTGTTAAGAGAAGGATCAACTTCGTCATTATTTCCAAGTCTCTCAGAGCTTTGTTGGTTAGATCTCTCATACTGTGAATCCCTCACATCCCTTCCAACTAACCCTTTTAAGCTGAAATGGCTACGGAAACTATATCTTTGTGGCTGCTCAAATCTCGAGAAGCTCCCTGAGATAGAAGAGGATATGGAAAATTTAATGGTGCTCATCTTAGATGGATCAGGAATACAAGAATTACCTTCAAGCTTGCAAAATTTGGTAGCTCTTGAGGAGTTGAGCTTGCAAGGTTGCAGAAGCCTTGTGTTCATTCCATCTTCAATTGGATGTCTCAGCAAACTCCGCATGCTTGATCTTACCTACTGTGAGTCACTTGAATCTCTTCCTAGCAGCATTTTCAACCTCAAGTTGACAAAGCTTGATTTGCATGGTTGCTCAATGCTCAAGACATTATCAAAGATCATGGAACCTGCAGAATGTTTTGCTCAACTTAACCTAGCAAACACAGCAATTAAAGAAATACCTTCATCCTTGACCTATTTGGTTGGTCTTCAAACCTTGCAGCTCAACTTGTGCAAAGATCTTGAGTTTCTTCCAAACAGCATCGGTAATCTAAACCTTCTCTCCAAGCTTGATTTCTCAGGCTGTGATAAACTATCAGAACTCCCTAGTGACATTGGAAACCTATCATCACTAAAGGAATTGTACCTGCACGAAAGCAGCATTGTGGAGCTTCCCGAGAGTATTGCTCATCTTGCAAGCTTGAAATCACTGGATTTAAGTGATTGCAAGAGGCTTGAATATATCCCAGGTCTTCCACCATGTTTAGAACACTTTGTGGCGTTTGATTGCCCAGCTGTTAGGAGAGTGTCAAGTTCAGGATTTGACACTAAAGTTCCATCAGATTCCAAAGAAGGTATTTTCAAGTTTCACCTTACCAATAGCCAAGAACTGAATCAAAGTTGTCAGAGTAATATTGGTGGTGATGCATGGCAAAGAATGCTAGATACTGCATATAGGTCTGTGTTGTATTGCTTTCCAGGGAGTGCAGTTCCTCACTGGTTCCCTGATCGTTGCAAGGGACATTCAGTAACTTTGAAGCAGAGTTCTCTGAATTGGTGCAGTGATAATAGGTTCATTGGTTTTGCTTTATGTGTGGTGTTTGGACTTGAAGGTATGCATGATGAAGAATGTAAATACAGTGTTTTTAGCTATAGATTCACATTTGAATGTGATGATGGCATTCACGTTGTTCCTAGCAATGATCAGCTAAGATACTATTTCAATTGGAGGGGCAGACACAGATTCATTGTGCATGATCACACATTCATATGGAAATCTTACTTGGACTCTCACACTATTAGCCACATGCTATCTCATAATGCACACAGCTTCAGTTTGGAGATATGCAATTACGATGTTGGTCGGTCTTGGCAAAATTATAGGCCAAGGTTCAATATAAAGGAGTGTGGAATATCACCCCTTTACAGCGACTGA 3831 0.4051 MLWHRKHDVFLSFRGEDTRNGFTTHLYAALSAKGINTYMHHMLAASDDGAQEKQAIQESNIYLIIFSQHYAYSARCLDQLTHILDCKHRYGKDVIPVFYKMDPSIVRNQTGTYADAFLKHQQTFGDQVQRWKLALTQLAGSSPTHSKINSARPDHILVEEIVQHIWRRLKRNYSTDYQGLVGIQDHVTQIQSLLHVELEAVRIIGICGIGGIGKTTIAGALYHELSSQFSFSTFALSVQQQIESHGMQHTQCKYISELLEEKIPADNLGLSVLTEKLRVSKVLLILDDMNNSAQIRDLIGGHGSFGPGSRIIVTSRDMQTLKNAGVDEIYEAKEMNFQDSLQLFSLNAFKQKTPIENYVSLSRKVLNYAKGIPLALKVLGSMLHGSTEGEWECVLQKLEKISNPETYNLLKLSYDGLREEQKDMFLDIACFYKGGHDVNTVKQAFDSCGSNAATGLRVLSDRGLISVLRGELMMHDLIQEMGQEIVHNEYAGEPGKHSRLWKHDDIYHVLRENKGTDAVQCVFLDMCQIKEVQLHSQTFKMMHNLRLLQFYKSRPNQDLKVHLPAFLDSLPDSLRFLCWNGFPQRSLPQDFCPKNLVILDMCDSHLEQLWEKDQKLPNLKRLDLSGSKNLVQVPDLCHCPNIEEIILSHCKSLVQVYSSGFLNKLNCVWLNGCTELRNVNLPSNILSKSSGLIVLNDCTNLELFSMEITAKDVVLHGCPRSRSIESLFRNCLPGDMIRCTMGRRGGSLFERFSDTFDPIGDPAPNLGDEPKNNIHLLNLKVLREGSTSSLFPSLSELCWLDLSYCESLTSLPTNPFKLKWLRKLYLCGCSNLEKLPEIEEDMENLMVLILDGSGIQELPSSLQNLVALEELSLQGCRSLVFIPSSIGCLSKLRMLDLTYCESLESLPSSIFNLKLTKLDLHGCSMLKTLSKIMEPAECFAQLNLANTAIKEIPSSLTYLVGLQTLQLNLCKDLEFLPNSIGNLNLLSKLDFSGCDKLSELPSDIGNLSSLKELYLHESSIVELPESIAHLASLKSLDLSDCKRLEYIPGLPPCLEHFVAFDCPAVRRVSSSGFDTKVPSDSKEGIFKFHLTNSQELNQSCQSNIGGDAWQRMLDTAYRSVLYCFPGSAVPHWFPDRCKGHSVTLKQSSLNWCSDNRFIGFALCVVFGLEGMHDEECKYSVFSYRFTFECDDGIHVVPSNDQLRYYFNWRGRHRFIVHDHTFIWKSYLDSHTISHMLSHNAHSFSLEICNYDVGRSWQNYRPRFNIKECGISPLYSD 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242258g00004 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 428 IPR027417 -
Stsc242258g00004 1276 Gene3D - 172 329 IPR027417 -
Stsc242258g00004 1276 SUPERFAMILY L domain-like 474 709 - -
Stsc242258g00004 1276 SMART LRR_typ_2 889 913 IPR003591 -
Stsc242258g00004 1276 SMART LRR_typ_2 616 639 IPR003591 -
Stsc242258g00004 1276 SMART LRR_typ_2 842 864 IPR003591 -
Stsc242258g00004 1276 SMART LRR_typ_2 1007 1030 IPR003591 -
Stsc242258g00004 1276 Gene3D - 3 171 IPR035897 -
Stsc242258g00004 1276 Pfam C-JID domain 1124 1276 IPR045344 -
Stsc242258g00004 1276 PRINTS Disease resistance protein signature 614 630 - -
Stsc242258g00004 1276 PRINTS Disease resistance protein signature 276 290 - -
Stsc242258g00004 1276 PRINTS Disease resistance protein signature 369 383 - -
Stsc242258g00004 1276 PRINTS Disease resistance protein signature 203 218 - -
Stsc242258g00004 1276 Gene3D Ribonuclease Inhibitor 509 738 IPR032675 -
Stsc242258g00004 1276 Gene3D Ribonuclease Inhibitor 765 937 IPR032675 -
Stsc242258g00004 1276 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 705 IPR044974 GO:0006952
Stsc242258g00004 1276 SMART till_3 6 141 IPR000157 GO:0007165
Stsc242258g00004 1276 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 140 IPR035897 -
Stsc242258g00004 1276 Gene3D - 335 418 IPR042197 -
Stsc242258g00004 1276 SUPERFAMILY L domain-like 773 1064 - -
Stsc242258g00004 1276 Pfam NB-ARC domain 184 400 IPR002182 GO:0043531
Stsc242258g00004 1276 ProSiteProfiles TIR domain profile. 5 169 IPR000157 GO:0007165
Stsc242258g00004 1276 Pfam TIR domain 6 183 IPR000157 GO:0007165
Stsc242258g00004 1276 Gene3D Ribonuclease Inhibitor 938 1047 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242258g00004 Stsc-Chr242258 12745 17052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242258g00004 772 965 WRKY Transcription Factor Family AT4G12020 35.455 1.44e-14 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242258g00004 - - aip:107633930 2201.02