LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc242258g00001	ATGATGGTGGCGAAATCAGGGGAGAATGGTTGTGTGGCTCCGTTCCTTGACAAGTGCTACGATATGGTCTCCAACCCCTCCACCGACTCCGTCATCTGTTGGGGCCAAGACGGTCACACCTTCCTCATCTCCGATATCACCCATTTCTCCCTCTCTCTTCTCCCCACTTACTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAACATCTATGGATTCAGGAAAATCGATGCGGATCGCTGGGAGTTCGCCAATGATAACTTTGTAAAGGGTCAGACCCATTTGTTGAAGAATATTCGTAGAAGGAAACATCCGCACAATAATGGGGATCACCAAAACCCCAATTCCGATGATGGGCTTTGGAACCAAGTACAGAATCTCAAATCCGACAAAAATTCCCTCATGCAGGAGTTGGTCAAACTCAGGCAGCACCAGGAATGTGCTGAGAATAAGTTGGTAGTACTCACCGATCGGATTCAAGGAATGGAGACTCATCAGCAGCAGATGTTATCATTCTTGGTCATGGTTGTCCAAAACCCTGCCTTCATGCTTCAACTCCTTCAGCCTAACGACAACAATTGGCGTATGACCCAACCACCTTCTTCAGAATCAGATGGGATCATAATCAAGTATAAACCTCCTTCTCTACCTGAAAATCTGAAACCTGTACTTCCCCCATCTCCTAGCTTTGAGAACCAACCGGAGCCTGACCTTGCTTTCGAAGGGCTAAAAGACTTGCGCATCAGTTCTGAATTCTTGAAAGTTCTTATGGATGAGAAATTGTCCCCTTTGGAAAATCATTCTCCATTTCTTCTTCCAGATTTACCTGATGATGATGCTTCATGGGAACAGCTTTTTCTCCCTACTCCTTCCTTGGAAACTGAGAAGCCGACTACACCGGAAGATCAAACTCAATCTTTTGAGTCTTTGATTCTAGAAATGGAGAAAACTGAAGAGACCGATGCATTGGAATTACGAGCTGATGGAGTTCATTTGGAGGGCTCTGACAAACTGAAATCTCTAACTCAGCAAATGGAACTTCTGGCTTCTGAAACTGACAATGACGAGGAGGAAGGAACCAAGTAA	1092	0.4542	MMVAKSGENGCVAPFLDKCYDMVSNPSTDSVICWGQDGHTFLISDITHFSLSLLPTYFKHNNFSSFIRQLNIYGFRKIDADRWEFANDNFVKGQTHLLKNIRRRKHPHNNGDHQNPNSDDGLWNQVQNLKSDKNSLMQELVKLRQHQECAENKLVVLTDRIQGMETHQQQMLSFLVMVVQNPAFMLQLLQPNDNNWRMTQPPSSESDGIIIKYKPPSLPENLKPVLPPSPSFENQPEPDLAFEGLKDLRISSEFLKVLMDEKLSPLENHSPFLLPDLPDDDASWEQLFLPTPSLETEKPTTPEDQTQSFESLILEMEKTEETDALELRADGVHLEGSDKLKSLTQQMELLASETDNDEEEGTK	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc242258g00001	363	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	8	275	IPR027725	-
	Stsc242258g00001	363	Gene3D	-	8	105	IPR036388	-
	Stsc242258g00001	363	FunFam	Heat stress transcription factor B-4	7	105	-	-
	Stsc242258g00001	363	Coils	Coil	126	153	-	-
	Stsc242258g00001	363	ProSitePatterns	HSF-type DNA-binding domain signature.	54	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc242258g00001	363	MobiDBLite	consensus disorder prediction	344	363	-	-
	Stsc242258g00001	363	SMART	hsfneu3	11	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc242258g00001	363	Coils	Coil	340	360	-	-
	Stsc242258g00001	363	SUPERFAMILY	"Winged helix" DNA-binding domain	12	104	IPR036390	-
	Stsc242258g00001	363	PRINTS	Heat shock factor (HSF) domain signature	15	38	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc242258g00001	363	PRINTS	Heat shock factor (HSF) domain signature	53	65	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc242258g00001	363	PRINTS	Heat shock factor (HSF) domain signature	66	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc242258g00001	363	Pfam	HSF-type DNA-binding	15	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc242258g00001	Stsc-Chr242258	8199	10038	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc242258g00001	12	352	HSF	AT1G67970	42.037	1.62e-85	262

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Stsc242258g00001		HSF_DNA-bind	1.3e-29	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc242258g00001	K09419		-	gmx:100813694	404.831