Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242257g00001 ATGTCTAGTTCATCGGAATACTCGGAATTTTCCAGCCAAAAGGCGGCGAGGTCGCCGGAAAAATCAAGCTTCTCTCAGACATGCAGTTTGTTGAGTCAATACATCAAAGAAAAGGGAAGCTTTGGGGATCTTACACTCGGCATCACATGCAATTCCGAACCAACTGGGTCACCTGAAACTTCTTGTCAGTCTGCAACAACTATGAACCTATTTCCTACCAAAGAAAACAACGTTGTACCGAAGAACCTCGCATTCACAGGGACTGCCATGGATTTGCTCTCTCCACAGCCTGCTTTTCGTCCCAGTCTTCACTCTGAAGAGATTCCAACCTTGATCAATTCCAGTGCAGTTAAGTCTGTGAGCAAGAGCCCAAAAACTGCACAATTGACAATCTTCTATAATGGTCAAGTTGTTGTGTTCGATGATTGTCCGGCCGAGAAGGCGAACGAGCTCATGGCTTTCGCCAACAAAGGAGTCTCTTCTCAGAGCCAGAACAGCTCTGTCTACACTTACACTCAGAGCCAGCCTTCATTTCCTCCTAATTTGGCCAGAACATCGGCTGCTGATTCGACCCTTCAAGCCTTTCCGAAGGTGAATATCGTCGCAAGTGCCGGTACCAATTCGATCCACGAGCACTCCAAACCGCAGTCCAGACCTGTTGTTTGCGATCTACCGATTGCGAGGAAGGCTTCGCTTCACCGGTTCTTGGAGAAGAGAAAGGATAGAATTGCATCAAAGGGTCCATATCAAGCAGCAAATCCCATTGGGAATGCTAACAAGCCAGCTGAATCCATGTCATGGCTTGAATTGGGTGCTAAATCTCAAGAATGA 831 0.4717 MSSSSEYSEFSSQKAARSPEKSSFSQTCSLLSQYIKEKGSFGDLTLGITCNSEPTGSPETSCQSATTMNLFPTKENNVVPKNLAFTGTAMDLLSPQPAFRPSLHSEEIPTLINSSAVKSVSKSPKTAQLTIFYNGQVVVFDDCPAEKANELMAFANKGVSSQSQNSSVYTYTQSQPSFPPNLARTSAADSTLQAFPKVNIVASAGTNSIHEHSKPQSRPVVCDLPIARKASLHRFLEKRKDRIASKGPYQAANPIGNANKPAESMSWLELGAKSQE 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242257g00001 276 Pfam Jas motif 225 250 IPR018467 -
Stsc242257g00001 276 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 14 258 IPR040390 -
Stsc242257g00001 276 ProSiteProfiles Tify domain profile. 122 157 IPR010399 -
Stsc242257g00001 276 MobiDBLite consensus disorder prediction 245 276 - -
Stsc242257g00001 276 Pfam tify domain 123 156 IPR010399 -
Stsc242257g00001 276 SMART tify_2 122 157 IPR010399 -
Stsc242257g00001 276 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242257g00001 Stsc-Chr242257 13610 16055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242257g00001 1 273 Tify Gene Family AT1G19180 39.209 9.69e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Stsc242257g00001 tify 9.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242257g00001 K13464 - gmx:100801449 357.836