Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242255g00005 ATGGGTGTTATAACAACAACAAGGAGGATTGAACGTTTTGGTCGTGCAACACCACCGACATGCAAGTACTGGGTAGCTGGGAGATGTAACAGAAATCCTTGCAGATTTTCACATAGCTTACCAACATCTCCATCCAATGTATACTATAATCCCAACACCACTTATATCCATTCCAAGAAGCCAACAATATGCGCACCAAAGGCCGTTCAGAAGCCAGCAAATCATAAACCAAAGGCTGTTGTGTCTGTTGAGAAGCCAACCAAGTGCCAAGCTGAGGCTATGTCTGTTGAGAAGCTTATTGAGTGTGCACCAAAGGCTACGTCTGTTGAGAAGGCAACCAACTGTGATCAAAAGTCTTCATTGATTGAAAAGACTGCAGATGTGGAAGATGCAGCCACTGTTGCTATAGCTCCTGTGGAGAAATCACGCAGTATTTGTAAATATTGGATGACTGACAATTGTGTTCATGGTGACCTGTGTCCGAATTTGCATTCGTGGTTTTATGGTGATGGATTTTCTCCACTGGCAAAGCTTCATGAACATAACAAG 549 0.4317 MGVITTTRRIERFGRATPPTCKYWVAGRCNRNPCRFSHSLPTSPSNVYYNPNTTYIHSKKPTICAPKAVQKPANHKPKAVVSVEKPTKCQAEAMSVEKLIECAPKATSVEKATNCDQKSSLIEKTADVEDAATVAIAPVEKSRSICKYWMTDNCVHGDLCPNLHSWFYGDGFSPLAKLHEHNK 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242255g00005 183 SMART c3hfinal6 141 166 IPR000571 GO:0046872
Stsc242255g00005 183 SMART c3hfinal6 16 40 IPR000571 GO:0046872
Stsc242255g00005 183 PANTHER - 27 183 IPR044715 -
Stsc242255g00005 183 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Stsc242255g00005 183 SUPERFAMILY CCCH zinc finger 140 165 IPR036855 GO:0046872
Stsc242255g00005 183 ProSiteProfiles Zinc finger C3H1-type profile. 140 167 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242255g00005 Stsc-Chr242255 33560 34108 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc242255g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242255g00005 - - ahf:112729659 251.521