Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242255g00004 ATGGCTATTATAACAACAACAAGGAGGATTGAACGTTTCGGTCGTACAACACCACCGACATGCAAGTACTGGCTAGCTGGGAGATGCAACAGAAATCCTTGCAGATTTTCACATAGCTTACCAACATCTCCATCCAATGTATACTTTAATCCCAACACCACATATCACCATTCCAAGAAGCCTACAATATGCTCACCAAAGCCCCTTCAGAAGCCTGCAAATCATGCACCAAAGGCTGTTGTATCTATTGAGAAGCCAATCAAGTGTGAATCAGAGGCTATGTGTGTTGAGAAGCTTATTGAGTGTGGACCAAAGGCTATGTCTGTTGAGAAGGCTGCAGATGTGGAAGATGCGGCCACTGTTGCTATAGCTCCTGTGGAGAAATCACGCAGTATTTGTAAATATTGGATGACTGACAATTGTGTTCATGGTGACCTGTGTCCGAATTTGCATTTGTGGTTTTATGGTGAAGGATTTTCTCCACTTGCAAAGCTTCATGAACATAACAAGGTTGTCACTGGAATTGCTCTGCCTACTGGTTCAGACAAACTTTATTCTGGTAGCATAGATGGCACAGTTCGGGCGTGGGACTGCAACACTGGCCGATGTGTTAATTTCATAAATCTTGACTCTGAGGTCACCTCTTTGATATCTGAGGGCCCGTGGGTTTTTGCTGGTTTGAAGAATTCTGTAAGGGCACGGAACATTCAGACTGGTGTGGATGTTACCCTCGATGGACCCAAGGGGCAAGTTCTTTCCCTGAATTTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATGCAGCTCTGATCCCAAAGCTGAGTCTCCTTTCGAACTGGTTGCAACACTAAGTGGTCATACTAAACCAGTGGTTTGTCTTGCTATTGGATGCTACAAGATGCTTTATTCTGGCTCCATGGACCATAGCATTAAGGTTTGGGACCTTGATACATTAGAGTGCACGATGACACTTAACGGCCATACCGACACAGTCACATTCCTTATTTGTTGGGAGGATTATTTGTTATCGAGTTCATCGGATTGCACAGTCAATGTCTGGGTGTGCACTGAGGAGGGAACTCTGAAAGTGGCATACACTCACACCGAAGAAAATGGTGTTCTTGGACTGTATGGGATGACTGATGCAGACGCCAAGCCAATATTATTTTGCTCGTGCAAAGACAATTCAGTTCGTATGTATGAATTGCCAACCACAAATCCACTAGAGAGGACCTGA 1260 0.4452 MAIITTTRRIERFGRTTPPTCKYWLAGRCNRNPCRFSHSLPTSPSNVYFNPNTTYHHSKKPTICSPKPLQKPANHAPKAVVSIEKPIKCESEAMCVEKLIECGPKAMSVEKAADVEDAATVAIAPVEKSRSICKYWMTDNCVHGDLCPNLHLWFYGEGFSPLAKLHEHNKVVTGIALPTGSDKLYSGSIDGTVRAWDCNTGRCVNFINLDSEVTSLISEGPWVFAGLKNSVRARNIQTGVDVTLDGPKGQVLSLNFGNDILLAGAEDGVIYAWRCSSDPKAESPFELVATLSGHTKPVVCLAIGCYKMLYSGSMDHSIKVWDLDTLECTMTLNGHTDTVTFLICWEDYLLSSSSDCTVNVWVCTEEGTLKVAYTHTEENGVLGLYGMTDADAKPILFCSCKDNSVRMYELPTTNPLERT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242255g00004 419 SUPERFAMILY WD40 repeat-like 150 413 IPR036322 GO:0005515
Stsc242255g00004 419 Pfam WD domain, G-beta repeat 160 197 IPR001680 GO:0005515
Stsc242255g00004 419 Pfam WD domain, G-beta repeat 327 361 IPR001680 GO:0005515
Stsc242255g00004 419 Pfam WD domain, G-beta repeat 286 322 IPR001680 GO:0005515
Stsc242255g00004 419 ProSiteProfiles Zinc finger C3H1-type profile. 127 154 IPR000571 GO:0046872
Stsc242255g00004 419 PRINTS G protein beta WD-40 repeat signature 184 198 IPR020472 -
Stsc242255g00004 419 PRINTS G protein beta WD-40 repeat signature 309 323 IPR020472 -
Stsc242255g00004 419 PRINTS G protein beta WD-40 repeat signature 349 363 IPR020472 -
Stsc242255g00004 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 165 206 IPR001680 GO:0005515
Stsc242255g00004 419 ProSitePatterns Trp-Asp (WD) repeats signature. 309 323 IPR019775 -
Stsc242255g00004 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 331 IPR001680 GO:0005515
Stsc242255g00004 419 PANTHER - 28 412 IPR044715 -
Stsc242255g00004 419 Gene3D - 278 419 IPR015943 GO:0005515
Stsc242255g00004 419 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Stsc242255g00004 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 361 IPR001680 GO:0005515
Stsc242255g00004 419 SMART c3hfinal6 128 153 IPR000571 GO:0046872
Stsc242255g00004 419 SMART c3hfinal6 15 40 IPR000571 GO:0046872
Stsc242255g00004 419 Gene3D - 148 277 IPR015943 GO:0005515
Stsc242255g00004 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 165 197 - -
Stsc242255g00004 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 325 - -
Stsc242255g00004 419 SMART WD40_4 237 274 IPR001680 GO:0005515
Stsc242255g00004 419 SMART WD40_4 284 322 IPR001680 GO:0005515
Stsc242255g00004 419 SMART WD40_4 368 409 IPR001680 GO:0005515
Stsc242255g00004 419 SMART WD40_4 325 362 IPR001680 GO:0005515
Stsc242255g00004 419 SMART WD40_4 158 197 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242255g00004 Stsc-Chr242255 25549 28639 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242255g00004 238 412 Miscellaneous Gene Families AT5G08390 27.473 7.09e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc242255g00004 WD40 0.0036 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242255g00004 - - aip:107624831 656.751