Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242250g00001 ATGACTGAAGTTGTAGCAGAACTCGATTTGAATCAAGATGCTTTGCGTGACATAGAAGAGCGAATTAGACGCCTAGAAAGCCTAATTTTCAGAGCTAGGCAGCCACAGAGGTGGCACCATAGTCACAGTCCTGTCCGAATAACTACATTCACCGGAGAAGTGTTAATGGATGGGATTCAAGACGAAGGAAGACCACAGCCGGAAGAGGTAGAGGTTGGAGATGGTAACATGGAAAACGGCCGTTGTAGGGGCAAAAGGAAGGCATCTGCAATTTTGGTTGCTAAAGCGCTTGGATTGGAAACTAAAAGTGACAAGTCAAAGGGACGCGCCGGAAACTATTTTGATTGTAACATATGCTTGAAAATGGCAAGAGATCCTGTTTTGACTTGCTGTGGTCACTTGTTCTGCTGGCCGTGCTTCTTTCGCTTGTCGTATGCTTATGCAAATGCCAGGGAATGCCCTGTGTGCGATGGAGAGGTCATGGAAACATGCATTACTCCGATTTATGGATCTGCAAGAGTTGATGACAGCAATCAGCTAGAATCGGAAGAGAATGGCTGTGAAGTAGTTCCTGCTCGACCTTGTGCACGCAGAGTTAAGCTTAGCAAGGTGAAGTGTTTCAGAAATCGCGGTTTTGCATTGAATAATCCTCGCCCATCATCAAATCAAAGTTCAAGGCCAGTAATCCAAGGTGTTGCTTCACTTTCACCTGCTGTAACTCCTCCACAAAGACCTTTAGAGGGACTTGATTCTTACCTTGACAGTGACTCTGAAGGAAGCACCGTACAGCTGAATCCGGATGCTGTTCATGGAGATTCGAATTTAAACACTGATGCTTGA 840 0.456 MTEVVAELDLNQDALRDIEERIRRLESLIFRARQPQRWHHSHSPVRITTFTGEVLMDGIQDEGRPQPEEVEVGDGNMENGRCRGKRKASAILVAKALGLETKSDKSKGRAGNYFDCNICLKMARDPVLTCCGHLFCWPCFFRLSYAYANARECPVCDGEVMETCITPIYGSARVDDSNQLESEENGCEVVPARPCARRVKLSKVKCFRNRGFALNNPRPSSNQSSRPVIQGVASLSPAVTPPQRPLEGLDSYLDSDSEGSTVQLNPDAVHGDSNLNTDA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242250g00001 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 91 205 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc242250g00001 279 MobiDBLite consensus disorder prediction 254 279 - -
Stsc242250g00001 279 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
Stsc242250g00001 279 MobiDBLite consensus disorder prediction 235 279 - -
Stsc242250g00001 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 223 IPR013083 -
Stsc242250g00001 279 Coils Coil 8 28 - -
Stsc242250g00001 279 SMART ring_2 116 156 IPR001841 -
Stsc242250g00001 279 SUPERFAMILY RING/U-box 112 163 - -
Stsc242250g00001 279 Pfam zinc-RING finger domain 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242250g00001 Stsc-Chr242250 20748 22989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242250g00001 96 200 C3H Transcription Factor Family AT3G58030 50.000 7.72e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242250g00001 - - adu:107458846 432.565