Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242241g00004 ATGGACGGCAACAAGGATGAAGCGTTACGCTGCCTTGGAATCGCTGAGGAAGCAATCGCAGCCGGTAACAAATCCCGCGCCCTCAAATTCATCGGAATCGCTCAGCGGCTCAACCGTAACCTCCTCGTCGATGATTTGCTGAGCAAGTGCGAGAGCATCGATTCTGAGTCCTCTGCGTCTTCTTCTCCTTCAGAACATAAAGGTAACGAAAATCACGTTAAGAGAACACTGAACGGTGCATCGAAAATTGATGATGAGTGTTTGAACGAGGAGAGGAATTACACGGAGGAGAATGTGAAGTTGATTAGGGAAATTAAATTGAAGAGTGATTACTACGCGATCTTGGGAGTTGAGAAGAGTTGTTCGGTTGAAGAGATTAGAAAGGCTTATAGGAAACTCTCCTTGAAGGTTCATCCGGATAAGAACAAGGCACCGGGTTCCGAAGAGGCCTTTAAGAAGGTCTCAAAAGCATTTAAATGCTTGAGTGATGATAGTTCTAGAAGGCAGTATGATCAGACTGGATTGGTCGATGAATTCGAGTACAATCAGCAGTACAGTGTCCCGCGCCGGAGGAGGAGAACAGCGGCAAGCCGTGATTTCTTCGACGATGATTTCGATCCAGATGAGATATTCAGGGCGTTTTTTGGACAATCCGATGTGTTTGGGAGGCAACATGTTTACAGAACAAGGGCTGCAACCCATGATCATCATCATCAAAGACAGGGTTTTCAGGGTGTTGCGGGTGGAACAGGGCTTAATGTTATGCTCCTTATTCAGTTGTTGCCGTTCTTGATCATTTTGCTGCTTGCTTACTTGCCATTCTCTGAACCTGAGTATTCTCTGTACAAGAATTACTCATATCAATTTCCCAAGACCGTAGAGAATTATGGGATTCAATATTTCGTAAAGTCTCAAGCCTTTGATCGTAACTATCCGCAGGGGAGTGCTGCTCGTTCTACCATTGAGGACAATGTGATAAAAGATTATAAGAATATGCTTCGGCGTTATTGTCAGGTTGAGATTCAGAGGCGGAGTTGGAATAGGAATCTTCCTACTCCTCACTGTGAAAAGTTGCAAAACTTTGGAGTAGTAGCATGA 1098 0.4472 MDGNKDEALRCLGIAEEAIAAGNKSRALKFIGIAQRLNRNLLVDDLLSKCESIDSESSASSSPSEHKGNENHVKRTLNGASKIDDECLNEERNYTEENVKLIREIKLKSDYYAILGVEKSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVSKAFKCLSDDSSRRQYDQTGLVDEFEYNQQYSVPRRRRRTAASRDFFDDDFDPDEIFRAFFGQSDVFGRQHVYRTRAATHDHHHQRQGFQGVAGGTGLNVMLLIQLLPFLIILLLAYLPFSEPEYSLYKNYSYQFPKTVENYGIQYFVKSQAFDRNYPQGSAARSTIEDNVIKDYKNMLRRYCQVEIQRRSWNRNLPTPHCEKLQNFGVVA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242241g00004 365 Pfam DnaJ domain 110 171 IPR001623 -
Stsc242241g00004 365 SUPERFAMILY Chaperone J-domain 109 221 IPR036869 -
Stsc242241g00004 365 MobiDBLite consensus disorder prediction 54 76 - -
Stsc242241g00004 365 Gene3D DnaJ domain 107 245 IPR036869 -
Stsc242241g00004 365 FunFam Chaperone protein dnaJ 49 106 226 - -
Stsc242241g00004 365 CDD DnaJ 110 163 IPR001623 -
Stsc242241g00004 365 Pfam Domain of unknown function (DUF1977) 275 345 IPR015399 -
Stsc242241g00004 365 PRINTS DnaJ domain signature 112 130 IPR001623 -
Stsc242241g00004 365 PRINTS DnaJ domain signature 146 166 IPR001623 -
Stsc242241g00004 365 PRINTS DnaJ domain signature 130 145 IPR001623 -
Stsc242241g00004 365 SMART dnaj_3 109 166 IPR001623 -
Stsc242241g00004 365 ProSiteProfiles dnaJ domain profile. 110 174 IPR001623 -
Stsc242241g00004 365 PANTHER AT29763P-RELATED 1 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242241g00004 Stsc-Chr242241 13471 17067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242241g00004 105 171 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.028 2.44e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242241g00004 K09518 - aew:130775182 453.366