Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242237g00004 ATGAAGGAAAAAGTGGAATCACCAGTTACAGTTCTTGAGGACTATTTCAGGTCCTCAGATTCATCAGAAACAAGTAGTTCTTCAAAAGATCATTATCATAGTGGTTTGGATTCTGAGTATAATGAAATTTCAAGACCAAGTTGTTCATCAAGATGGAATTCATTTCTGCAAATCTTGAAGGGAAAATCATCAAAGAAGAATGCATTGCACCCTTTGAACATATCAAGGAGAATGAGTAGTAGCATGAGAGAGTCTCTATGGCCAAGTTGCCTCTTAGATGTTGCAAGCCCTTCACCTTGTAGGTCACCATGGAAGATCTTCTCTCACCATGATATTCAACTAGCAACCAATCATTTTAGCCAAGAAAACTTGATTGGAAAGGGTGGTTATGCAGAGGTATACAAAGGGTGTTTTCCAAATAATCAGCTTGTAGCAATTAAGAGGCTAACAAGAGGAAGTGCTGATGAGACCATAGGTGATTTTCTATCAGAACTTGGAGTTATGGCACATGTGAATCACCCCAACACTGCTAAGCTTGTTGGTTATGGTGTGGATGGTGGAATGTACCTTGTTCTTCAATTGTCGCAGAAAGGAAGCTTAGCTTCAGTGCTTTATGGTTCAAAGGAGAAATTACCATGGTGTATTAGGCAAAAAATTGCAATATGTGATTTTGGGCTTGCAAAATGGCTACCAGAGAATTGGACTCACCACACTGTTTCAAAATTTGAAGGAACTTTTGGGTACCTTGCACCTGAGTACTTGCTTCATGGCATTGTTGATGAGAAAACAGATGTATTTGCCTTTGGTGTTCTTCTTTTAGAATTGGTCAGTGGAAGGCGTGCACTTGATTATTCACAACAAAGCCTTGTTTTGTGGGCAAAACCATTGCTGAAAAAGAATGAAATTAAGGAGCTGTTTGATCCTTCACTAAATGAAGAATTTGACACAAGGCAGATGAATCTTATGTTATTAGCAGCTTCTTTGTGCATACAACAATCTTCGATTCGTCGCCCTTCAATGAGACAAGTTGTTCAACTTTTAAATGGCAATCTCAGCTGTTTTAAAGGCATGAAGAAAACTAGGTTTCCCTTCTTGAGAAAAGTCTTTCAAGAAGAACTCCTTGACTCTGAATAG 1134 0.3871 MKEKVESPVTVLEDYFRSSDSSETSSSSKDHYHSGLDSEYNEISRPSCSSRWNSFLQILKGKSSKKNALHPLNISRRMSSSMRESLWPSCLLDVASPSPCRSPWKIFSHHDIQLATNHFSQENLIGKGGYAEVYKGCFPNNQLVAIKRLTRGSADETIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLQLSQKGSLASVLYGSKEKLPWCIRQKIAICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNEIKELFDPSLNEEFDTRQMNLMLLAASLCIQQSSIRRPSMRQVVQLLNGNLSCFKGMKKTRFPFLRKVFQEELLDSE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242237g00004 377 Pfam Protein tyrosine and serine/threonine kinase 122 210 IPR001245 GO:0004672|GO:0006468
Stsc242237g00004 377 PANTHER OS08G0249100 PROTEIN 221 373 IPR046958 -
Stsc242237g00004 377 MobiDBLite consensus disorder prediction 16 36 - -
Stsc242237g00004 377 Gene3D Phosphorylase Kinase; domain 1 95 193 - -
Stsc242237g00004 377 Pfam Protein kinase domain 217 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242237g00004 377 SUPERFAMILY Protein kinase-like (PK-like) 104 362 IPR011009 -
Stsc242237g00004 377 ProSiteProfiles Protein kinase domain profile. 119 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242237g00004 377 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 91 193 - -
Stsc242237g00004 377 Gene3D Transferase(Phosphotransferase) domain 1 215 359 - -
Stsc242237g00004 377 ProSitePatterns Protein kinases ATP-binding region signature. 125 147 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242237g00004 Stsc-Chr242237 28449 31773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242237g00004 107 349 Receptor kinase-like Gene Family AT1G53420 34.722 1.23e-45 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc242237g00004 Pkinase 1.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242237g00004 - - gmx:100780587 578.941