Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242232g00005 ATGAACAACCTCCCTCTTCTTATTCTTACCTTTGCATTGGCCTTGCCGTTTATATGCTTCAAATGCGAGAGTGCACCGCAAAATGATGCACACGCACTCACCCAATTCCGCCTCCAAACCGACATACACGCCTCCCTCCTAACAAACTGGACCGGCGCCGATGCTTGCGCCTCTACCGCCGCTTGGCGCGGCGTCGAGTGCTCCCCAAACGGCAGAGTAGTGGCACTCTCCCTCCCTTCCCTCAATCTTCGAGGCCCCATCCATTCCCTCTCATCACTCACCTACCTCCGATTCCTTGATCTCCACGATAATCGCCTAAACGGCACCGTTTCCGCTCTTTGCAACTGCACCGCCCTCGAACTCCTCTACCTCTCCGGAAATGACTTCTCCGGCGAGGTTCCTCTGGAGATTTCCTCCCTCAAGCTCCTCGTGAGGCTTGACATCTCCGATAACAACCTCCGAGGATCGGTTCCCAAGGAAATTTCACGTTTAACTCACCTCCTCACGCTCCGCCTCCAGAACAATGCTCTTTCCGGCGAAGTCCCCGATTTCTCTTCCTCCCTCGCTAACCTCAAGGAGCTTAACATAACCAATAACGAACTCTCCGGACACTTACCGAATTCCATGCTCAACAGGTTCGGTATTGCAAGCTTCGCTGGGAATGGCGCACTCTGTGGTGATTCACCATTGCCAAACTGTTCCTCCGCCGAGACGACTCCTTCTCCTTCGTCGTCATCTTCTGATAACCAAACCGTTCCTTCAAATCCGAGCGCCATACCGAAATCGAGTAGCGTAATCGCAGCTCCAAAGAACCCGCCATCTCGTCGGAAAGGTTTAAGTCCCGGGGTAATCGTGGCGATTGTGGTGGCGGTTTGCGTGGTGTTTCTTGTGGTGGTCTCTTTCGCCGTGGCGCACTGCTGCGCTGGCGGGAGAACGTCTAACTCATTGGTTGGGAGTGAAAATGGGAAGAGGAAGAGTGAGAGCAGCTACGGGAGCGAGAAGAAGGCGTACGTTAGTGGGGGCGGCGCAGAAAGGGACAGTGATGGAACGGTGGACACTGAGAGGAGTAGGCTGGTGTTCTTCGACAGGAGGAGCCAGTTTGAGCTGGAGGATCTGCTTCGCGCATCGGCGGAGATGCTTGGGAAGGGGAGCTTGGGGACGGTGTATAGGGCGGTGTTGGATGACGGGTGCACGGTGGCGGTGAAGAGGCTGAAGGATGCGAACCCTTGTGAGAGGAGCGAGTTTGAGCAGTACATGGATGTTGTGGGGAAGATGAAACACCCAAACATTGTGAGGCTCAGAGCGTTTTATTATGCCAAGGAAGAAAAGCTTCTTGTCTATGATTATCTCCCCAATGGAAGCTTGCATACTCTTCTTCATGGGAACCGTGGAGGAGGAAGAATCCCATTAGATTGGACAACAAGAATAAGCCTGGTGTTAGGAGCAGCAAGAGGACTAGCTCGCATTCATGCAGAGTACAGTGCTGCCAAGATCCCTCACGGCAACATCAAATCTTCCAACGTCCTCCTCGACAAGAACGGCGTCGCATGCATCTCCGACTTCGGCCTCTCCCTCCTCCTTAACCCCGTCCACGCCATAGCCAGGATGGGCGGTTACAAAGCACCGGAGCAATCAGACCACAAGAAACTCTCCCAGGAAGCTGACGTCTACAGCTTCGGCGTCTTGATCTTGGAGGTTCTAACCGGGAAAGCACCGTCTCAGACTCCTTCATTGCCGCGGCCTCGGTTGGAGTTGGAGGAACAACACTTGGATCTTCCCAAATGGGTTCGTTCCCTTGTGAAGGATGGAGAGGAGTGGAACCCGGAGGTGTTTGATCAGGAACTTCTGAGGTACAAGAACATTGAGGATGAGCTTCTCGCCATGATGAATGTGGGGTTGGTTTGTACCGATTTGGAGCCGGAGAAGAGGCCAACTATGTTGGAGGTTGTGAAGATGGTTGAGGATATCAGGGTGGAACAGTCGCCTCTTGTGGAGGATTTTGATGAGTCCCGCAACTCGCTCTCGCCTTCCATTCCCACCACCGAAGATGGCATGGCCTAG 2061 0.5376 MNNLPLLILTFALALPFICFKCESAPQNDAHALTQFRLQTDIHASLLTNWTGADACASTAAWRGVECSPNGRVVALSLPSLNLRGPIHSLSSLTYLRFLDLHDNRLNGTVSALCNCTALELLYLSGNDFSGEVPLEISSLKLLVRLDISDNNLRGSVPKEISRLTHLLTLRLQNNALSGEVPDFSSSLANLKELNITNNELSGHLPNSMLNRFGIASFAGNGALCGDSPLPNCSSAETTPSPSSSSSDNQTVPSNPSAIPKSSSVIAAPKNPPSRRKGLSPGVIVAIVVAVCVVFLVVVSFAVAHCCAGGRTSNSLVGSENGKRKSESSYGSEKKAYVSGGGAERDSDGTVDTERSRLVFFDRRSQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCERSEFEQYMDVVGKMKHPNIVRLRAFYYAKEEKLLVYDYLPNGSLHTLLHGNRGGGRIPLDWTTRISLVLGAARGLARIHAEYSAAKIPHGNIKSSNVLLDKNGVACISDFGLSLLLNPVHAIARMGGYKAPEQSDHKKLSQEADVYSFGVLILEVLTGKAPSQTPSLPRPRLELEEQHLDLPKWVRSLVKDGEEWNPEVFDQELLRYKNIEDELLAMMNVGLVCTDLEPEKRPTMLEVVKMVEDIRVEQSPLVEDFDESRNSLSPSIPTTEDGMA 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242232g00005 686 MobiDBLite consensus disorder prediction 665 686 - -
Stsc242232g00005 686 Pfam Protein kinase domain 378 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242232g00005 686 SUPERFAMILY L domain-like 27 211 - -
Stsc242232g00005 686 FunFam Nuclear pore complex protein NUP107 26 183 - -
Stsc242232g00005 686 Gene3D Ribonuclease Inhibitor 22 90 IPR032675 -
Stsc242232g00005 686 Gene3D Ribonuclease Inhibitor 91 240 IPR032675 -
Stsc242232g00005 686 CDD STKc_IRAK 380 656 - -
Stsc242232g00005 686 Pfam Leucine rich repeat N-terminal domain 27 68 IPR013210 -
Stsc242232g00005 686 MobiDBLite consensus disorder prediction 314 350 - -
Stsc242232g00005 686 Gene3D Transferase(Phosphotransferase) domain 1 450 674 - -
Stsc242232g00005 686 ProSiteProfiles Protein kinase domain profile. 374 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242232g00005 686 FunFam pollen receptor-like kinase 1 344 449 - -
Stsc242232g00005 686 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 659 IPR046959 -
Stsc242232g00005 686 Gene3D Phosphorylase Kinase; domain 1 345 449 - -
Stsc242232g00005 686 MobiDBLite consensus disorder prediction 233 269 - -
Stsc242232g00005 686 SUPERFAMILY Protein kinase-like (PK-like) 378 653 IPR011009 -
Stsc242232g00005 686 MobiDBLite consensus disorder prediction 233 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242232g00005 Stsc-Chr242232 28818 32814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242232g00005 27 682 Receptor kinase-like Gene Family AT2G36570 64.042 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc242232g00005 Pkinase 1.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242232g00005 - - gmx:100808402 952.97