Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242231g00003 ATGCCTCTTTATGAGTTATACCGGCTTTCTAGAGAGAAGCTTGATGAAGAGATTAATGCCACACGTGCTACTGATCAATATCAATCTTCCTCGCCTGAGAAGGATTTTTTCGAGCTAATTTGGGAAAACGGAAACATTCTGACGACGCAGGGTCAGTCGAGTAGAGCTAGGAAGAGTCCGCCTCGCCGGAGCTTACCGTCTCACTGCTTGCCATCTCACAGTCCCAAGGGTAGAGACAGAGATGCAGGGTATGTTACCAATTCAAGGGTAGGGAAGTCTGGGGATTTAGGTACCGGATTGAATGAATTTTCGATGTCAGTGCCATCGACTGAAGTGGATATGGGTCATGATGAAGATGTCATACCTTGGTTGGATTATACAATGGATGGCTCTTTGCAGAATGAGTATGGTTCTAATTTCTTACATGAAATATCCGGGATCACGGAACATGATCTCCCCTCAAATAATTTCTCTCTTGTGGATAAATGTAGTGGTAATAAGGTATTTAGGGACTCTCATAAGAATTCTGCAGAACAAAGCAACTTTTCCAGCATTTCTTCGACCGGCATAGATGAGACAACTAGACCTAAAGCTAGCACAGGTGAATTATACCTGCCATCATCGATGATTTCAGTTGGATCAAGACAACTAGACCGGCATAGTAACGCAATGCTTCATCCCACAGCTACTGAGATTCCTTCTTCATCAAGTGGTTTTTCGAACTTAAAGATGCAGAATCAAGATCAAGTTATGCCTAGCAATTGTTCATCAGTTATAAATTTCTCCCATTTCGCAAGGCCTGCCAGTGTCGTGAGAGCTAAGAACATTGGGCTGAAGTCTGTTTCTTCTTCATCAAGATCTGAAAATAGGGGAAGTATGAATAATGGTGCTTCTGTACCTAGCAGTAATGTTCCAGAATCAACTCTTGCTGATTCAAGTGGTGAATGTCCAAAGGATCTAATGGGAAACTGCGAGAACGTTATGGAACAGCCCAGGGATGATTTGAAACTGTTGGAGTCAAAATCTCTTGAACAGAAAATTGCTGGTTCTGAACAGTCAGACCCTGCTAGCAAAGAGAAAGCCATTAAGATTGATCAAACTTCCAACCATGCTCTCGGCGAAACAGCCACTAACGGACAGATGGCTGCTGAAAGAAGTACGGAGCCGGTGGTAGCCTCTTCGTCTGTAGGCTCTGGCAACTGTGCAGACAGAGGTTCGGATGATCCAATTCAAAATTTGAAGCGAAAAAATCGAGACACTGAGGACTCTGAATGGCATAGTGATGATGTTGAGGAAGAATCAGTGGGTGTTAAAAAAGGAACTGCTGGACGTGGAGCTTCAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTACATAATCTTTCTGAAAGGAGGCGAAGAGATAGGATCAACGAGAAGATGCGTGCATTGCAAGAACTCATACCCAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAATCACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCCGGTTTATACATGCACCCAATGATGTTGCCACATGGAATGCAGCACATGCATGCACCACACTTGGCTCCTTTTTCGCCTATGGCCTATGGAATGCAAATGGGATTAGGTATGGGTTATGGCATGGCTATGCCTGATATGAATGGTGTATCATCTCAATTCCCAATGATTCAGGTTCCCCAAATGCAAGGAACTCATCTCCCTGTTGCACATATGTCTGGACCTACTGCAATGGTCAGATCAAATCCTCAAGGGTTCGGCCTTCCTGGTTTACGTCCTTGTGGAACCACGGGGCTTGGTCAGACTGCGGATCCAGCTTCAACATCCAGCTTAAAGGACCCATCGCTAAACACTGATTCGCTGGTTAAGCAAAGCACTGGTTGCGGCGGCCATGACTCAACTAGTCAGGTGCCTACCCAGTGTGAAGAAGTAGCAGCAGCAATAACTGTTGGATTTGAACAGTCAGCAATGGTGCATAGCAACAACCACCATAACTCTGAGGCTAATGACAATGGAACTCTTAATCCTGACAAAGAAGATAACCTTGTGACTGGTAATTCTTTTTCTGTCTTTAACTATCACTAA 2121 0.4432 MPLYELYRLSREKLDEEINATRATDQYQSSSPEKDFFELIWENGNILTTQGQSSRARKSPPRRSLPSHCLPSHSPKGRDRDAGYVTNSRVGKSGDLGTGLNEFSMSVPSTEVDMGHDEDVIPWLDYTMDGSLQNEYGSNFLHEISGITEHDLPSNNFSLVDKCSGNKVFRDSHKNSAEQSNFSSISSTGIDETTRPKASTGELYLPSSMISVGSRQLDRHSNAMLHPTATEIPSSSSGFSNLKMQNQDQVMPSNCSSVINFSHFARPASVVRAKNIGLKSVSSSSRSENRGSMNNGASVPSSNVPESTLADSSGECPKDLMGNCENVMEQPRDDLKLLESKSLEQKIAGSEQSDPASKEKAIKIDQTSNHALGETATNGQMAAERSTEPVVASSSVGSGNCADRGSDDPIQNLKRKNRDTEDSEWHSDDVEEESVGVKKGTAGRGASGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQMMSMGAGLYMHPMMLPHGMQHMHAPHLAPFSPMAYGMQMGLGMGYGMAMPDMNGVSSQFPMIQVPQMQGTHLPVAHMSGPTAMVRSNPQGFGLPGLRPCGTTGLGQTADPASTSSLKDPSLNTDSLVKQSTGCGGHDSTSQVPTQCEEVAAAITVGFEQSAMVHSNNHHNSEANDNGTLNPDKEDNLVTGNSFSVFNYH 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242231g00003 706 SMART finulus 459 508 IPR011598 GO:0046983
Stsc242231g00003 706 MobiDBLite consensus disorder prediction 604 630 - -
Stsc242231g00003 706 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 450 514 IPR036638 GO:0046983
Stsc242231g00003 706 MobiDBLite consensus disorder prediction 365 466 - -
Stsc242231g00003 706 CDD bHLH_AtPIF_like 453 515 IPR047265 -
Stsc242231g00003 706 MobiDBLite consensus disorder prediction 279 324 - -
Stsc242231g00003 706 MobiDBLite consensus disorder prediction 368 401 - -
Stsc242231g00003 706 Gene3D - 448 511 IPR036638 GO:0046983
Stsc242231g00003 706 MobiDBLite consensus disorder prediction 673 698 - -
Stsc242231g00003 706 Pfam Helix-loop-helix DNA-binding domain 457 503 IPR011598 GO:0046983
Stsc242231g00003 706 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 453 502 IPR011598 GO:0046983
Stsc242231g00003 706 MobiDBLite consensus disorder prediction 48 97 - -
Stsc242231g00003 706 PANTHER TRANSCRIPTION FACTOR PIF3 1 681 IPR044273 GO:0003700|GO:0006355
Stsc242231g00003 706 MobiDBLite consensus disorder prediction 612 630 - -
Stsc242231g00003 706 FunFam Basic helix-loop-helix transcription factor 448 511 - -
Stsc242231g00003 706 MobiDBLite consensus disorder prediction 179 198 - -
Stsc242231g00003 706 MobiDBLite consensus disorder prediction 279 310 - -
Stsc242231g00003 706 MobiDBLite consensus disorder prediction 408 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242231g00003 Stsc-Chr242231 20913 25298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242231g00003 1 582 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.654 2.34e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc242231g00003 HLH 3.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242231g00003 K12126 - gmx:100794974 784.252