Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242229g00007 ATGAGCTCCGGCGGCGATTCTTCCGGCGGAGGAGGAAGCAGCAGCTCCGCCAACGCCGACAACAAGGAGAAGGACAAGCAGAAGGAGAAGGCTAGGGTGAGTCGCACCTCCTTGATACTGTGGCACGCGCATCAAAACGACGCCGCTGCGGTGCGTAAGCTCCTCCAGGAGGATCCTTCACTCGTCAAGGCAAGGGACTACGATACCCGTACTCCTCTCCACGTCGCCGCACTCCACGGCTGGCTCGACGTCGCCAACTGCCTCATCGAGTTCGGAGCCGACGTCAACGCTCAGGATCGCTGGAAAAACACCCCTCTTGCCGATGCGGAAGGAGCTAGCAGGACTTCGGTGATCGAGCTCTTGAAATCTCACGGTGGATTGTCTTTTATTGACTTCTCTAACTCCACGCGTATTGGAAAGGGATCTTTTGGTGAGATTTTAAAAGCCTATTGGCGTGGGACTCCAGTTGCTGTCAAACGCATTCTTCCATCTCTTTCAGATGATCGATTGGTGATTCAGGACTTCAGGCATGAGGTCAATTTGTTGGTGAAGCTTCGACACCCTAATATAGTTCAATTTCTCGGAGCTGTCACTGACAGGACCCCCCTTATGTTAATTACTGAGTATCTAAGAGGGGGTGATCTTCATCAGTACCTCAAAGACAAAGGTTCATTGAGCCCTTCAACAGCTGTCAACTTTTCCATGGATATTGCCAGAGGCATGGCCTATCTTCACAATGAACCAAATGTTATAATTCATCGAGACCTAAAGCCAAGGAATGTTCTTTTGGTCAATTCTAGTGCTGATCATTTAAAAGTCGGGGATTTTGGGTTGAGTAAAATTATCAAGGTCAAAAATGCTCATGATGTATACAAGATGACCGGTGAAACAGGGAGCTACCGCTACATGGCTCCTGAAGTTTTCAAACATCGAAGATATGATAAGAAGGTTGATGTGTACTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCCCCTTTTGCAAGTTATGAACCTTATGATGCAGCCAAACGTGCAGCAGAAGGACACAGACCTACTTTTCGGGCAAAGGGTTATACCCCCGAACTGCAAGAGTTAACACTACAGTGTTGGGCTGCTGACATGAATCAAAGACCTTCATTCATAGATATCCTTAAACGGCTTGAAAAGATCAAGGAAAATTTACCTTCAGATCATCATTGGCATTTATTTACTTCATAA 1227 0.4694 MSSGGDSSGGGGSSSSANADNKEKDKQKEKARVSRTSLILWHAHQNDAAAVRKLLQEDPSLVKARDYDTRTPLHVAALHGWLDVANCLIEFGADVNAQDRWKNTPLADAEGASRTSVIELLKSHGGLSFIDFSNSTRIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTDRTPLMLITEYLRGGDLHQYLKDKGSLSPSTAVNFSMDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKIIKVKNAHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVYSFAMILYEMLEGEPPFASYEPYDAAKRAAEGHRPTFRAKGYTPELQELTLQCWAADMNQRPSFIDILKRLEKIKENLPSDHHWHLFTS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242229g00007 408 SMART serkin_6 132 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242229g00007 408 Gene3D - 11 131 IPR036770 -
Stsc242229g00007 408 Gene3D Phosphorylase Kinase; domain 1 132 211 - -
Stsc242229g00007 408 MobiDBLite consensus disorder prediction 1 18 - -
Stsc242229g00007 408 ProSiteProfiles Ankyrin repeat region circular profile. 68 100 - -
Stsc242229g00007 408 SMART ANK_2a 68 97 IPR002110 GO:0005515
Stsc242229g00007 408 FunFam Integrin-linked protein kinase family 211 406 - -
Stsc242229g00007 408 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 80 395 - -
Stsc242229g00007 408 PRINTS Tyrosine kinase catalytic domain signature 207 220 IPR001245 GO:0004672|GO:0006468
Stsc242229g00007 408 PRINTS Tyrosine kinase catalytic domain signature 245 263 IPR001245 GO:0004672|GO:0006468
Stsc242229g00007 408 PRINTS Tyrosine kinase catalytic domain signature 361 383 IPR001245 GO:0004672|GO:0006468
Stsc242229g00007 408 ProSiteProfiles Protein kinase domain profile. 132 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242229g00007 408 MobiDBLite consensus disorder prediction 1 31 - -
Stsc242229g00007 408 CDD STKc_MAP3K-like 138 390 - -
Stsc242229g00007 408 Pfam Protein tyrosine and serine/threonine kinase 135 390 IPR001245 GO:0004672|GO:0006468
Stsc242229g00007 408 Pfam Ankyrin repeats (3 copies) 35 99 IPR002110 GO:0005515
Stsc242229g00007 408 PIRSF ILK 126 408 - -
Stsc242229g00007 408 PIRSF ILK 1 129 - -
Stsc242229g00007 408 ProSitePatterns Protein kinases ATP-binding region signature. 138 159 IPR017441 GO:0005524
Stsc242229g00007 408 FunFam serine/threonine-protein kinase STY46-like 128 211 - -
Stsc242229g00007 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Stsc242229g00007 408 SUPERFAMILY Ankyrin repeat 35 137 IPR036770 -
Stsc242229g00007 408 SUPERFAMILY Protein kinase-like (PK-like) 131 403 IPR011009 -
Stsc242229g00007 408 Gene3D Transferase(Phosphotransferase) domain 1 212 404 - -
Stsc242229g00007 408 ProSiteProfiles Ankyrin repeat profile. 68 100 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242229g00007 Stsc-Chr242229 21792 26619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242229g00007 1 408 MAP Kinase Kinase Kinase AT1G14000 77.397 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Stsc242229g00007 PK_Tyr_Ser-Thr 3.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242229g00007 - - adu:107481197 773.467