Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242229g00004 ATGGCTACTGTGTTCTCAGTGTGTTCAGGTTCTTCTTTTCTCTCCCCATGCACTTCCCACACCAGGTGCTTGTCTTTTTCTCCCAAAGGATCACCACTTCTTCACCACCTCAAGAAACCTCTTTCTGTAAAATCCCTTTCTTCTTTGGGAACTCAAGAAGTGTCATCTGTATCAGTGTCACCAGCAGTTACCACCTTCTGGCAATGGCTTAAGGAAGAAGGTGTTATTTCTTCCAAGACACCAGTGAAACCTTCTGTGGTCCCTGAAGGCCTTGGACTTGTTGCAACCAAAGACATATCAAGAAACGAGGTTGTTCTTCAGGTTCCAAAGAGGTTTTGGATTAACCCAGATGCAGTTGCTGCTTCTGAGATTGGGAATGTGTGTAGTGGTCTTAAGCCATGGCTCTCTGTTGCTTTGTTCCTCATTAGGGAGAGGTCAAGGGATGATTCACTTTGGAAGCACTATTTCCCTGTTCTGCCAAAAGAAACTGATTCTACTATATACTGGTCAGAGGAGGAGCTCTCAGAGATTCAAGGTACTCAACTTCTGAACACAACATTGGGTGTGAAAGAGTATGTGCAGAATGAATTTATGAGACTGCAAGAAGAAATCATACTCCCTAATAAGAAGCTTTTTCCTTTTCCTATAACACTGGATGACTTCTTCTGGGCATTTGGAATTCTCAGATCAAGGGCATTTTCTCGGCTTCGCAATGAAAATCTGGTTGTTATTCCATTAGCAGACCTGATAAACCACAGTGCAAGAGTAACCACAGAAGATCATGCTTATGAAGTTAAAGGAGCTGCAGGCCTTTTCTCCTGGGATTACTTATTTTCCCTAAGAAGCCCCCTTTCTGTCAAGGCTGGGGAACAGGTATATATCCAATATGATTTGAACAAAAGCAATGCTGAGTTGGCTCTGGACTATGGTTTCATCGAACCAAATTCTGATCGTAATGCATATACCTTGACACTTGGAATATCCGAGTCCGACCCCTTCTATGATGACAAACTAGACATTGCAGAGACCAACGGTTTTGGTGAGACAGCATACTTTGACATATTCTACAACCAACCACTTCCACCAGGGATGATTCCATACCTGAGACTTGTAGCTCTAGGGGGTACCGATGCTTTCCTACTGGAAGCGCTATTCAGAAACACTGTTTGGAGTCATCTAGAATTGCCAGTGAGCCGTGACAATGAGGAACTTTTATGCAGGGTGGTTAGAGAGACCTGCAAATCTGCTCTTGCTGGTTATCATACAACCATTGAAGAGGATAACAAGTTAAAGGAAGCAAAATTAGATTCAAGGCTTGCAATGGCAGTCGGAATAAGAGAAGGGGAGAAGAAGGTCCTGCAACAAATTGATGAGGTCTTCAAGGAGAAAGAATTGGAATTGGACCTGTTAGAGTATTACCAAGAAAGGAGGCTCAAGGACCTTGGCCTCTGTGGCGAAAGTGGGGATATACTAGGTGACCTAGAGAAGTTCATGTAA 1497 0.4342 MATVFSVCSGSSFLSPCTSHTRCLSFSPKGSPLLHHLKKPLSVKSLSSLGTQEVSSVSVSPAVTTFWQWLKEEGVISSKTPVKPSVVPEGLGLVATKDISRNEVVLQVPKRFWINPDAVAASEIGNVCSGLKPWLSVALFLIRERSRDDSLWKHYFPVLPKETDSTIYWSEEELSEIQGTQLLNTTLGVKEYVQNEFMRLQEEIILPNKKLFPFPITLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSARVTTEDHAYEVKGAAGLFSWDYLFSLRSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNSDRNAYTLTLGISESDPFYDDKLDIAETNGFGETAYFDIFYNQPLPPGMIPYLRLVALGGTDAFLLEALFRNTVWSHLELPVSRDNEELLCRVVRETCKSALAGYHTTIEEDNKLKEAKLDSRLAMAVGIREGEKKVLQQIDEVFKEKELELDLLEYYQERRLKDLGLCGESGDILGDLEKFM 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242229g00004 498 Gene3D set domain protein methyltransferase, domain 1 59 312 - -
Stsc242229g00004 498 SUPERFAMILY SET domain 60 318 IPR046341 -
Stsc242229g00004 498 PIRSF RMT_SET 1 497 IPR011192 GO:0009507|GO:0030785
Stsc242229g00004 498 SMART set_7 78 303 IPR001214 GO:0005515
Stsc242229g00004 498 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 59 311 - -
Stsc242229g00004 498 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 313 477 - -
Stsc242229g00004 498 CDD SET_RBCMT 74 312 IPR044431 GO:0016279|GO:0018022
Stsc242229g00004 498 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 1 496 IPR011192 GO:0009507|GO:0030785
Stsc242229g00004 498 Pfam Rubisco LSMT substrate-binding 329 453 IPR015353 -
Stsc242229g00004 498 Pfam SET domain 90 296 IPR001214 GO:0005515
Stsc242229g00004 498 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 320 491 IPR036464 -
Stsc242229g00004 498 Gene3D - 313 477 IPR036464 -
Stsc242229g00004 498 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 61 444 - -
Stsc242229g00004 498 ProSiteProfiles SET domain profile. 73 297 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242229g00004 Stsc-Chr242229 9851 13661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242229g00004 57 252 NAC Transcription Factor Family AT3G56570 26.214 4.28e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc242229g00004 SET 4.4e-09 No_clan