Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242229g00001 TATCTATTTTGGACTTTTGACGAACACCTACTGGGCATCCGTTACAGATGGTCAGCAATAGCAGCTCAACTTCCTAAGAGGACTGACAACGAAATCAAGAACTACTGGAACACTCACCTAAAGAAGAGGCTAACAAGAATGGGAATAGATCCCACAACTCACAAGCCGAAAACTGATGCCATGGCTGGTGGCTCAGGCGCCGCATCCACTTCACAGTCTAAAGACGTGGCGAATCTGAGCCACATGGCTCAGTGGGAGAACGCTCGTCTCGAAGCCGAAGCAAGGCTTGTTAGAGAGTCCAAGCTTCTTCTTCAGGCTCACCAGGCACAACAAACAAACACAACACAAGCTCAGCCGGCTCGGCTCGTGCTTAACAAGATCACGGCGGCTCATCAACAGCCAATGCTTCCGCCGTGTCTTGACGTGCTCAAGGCATGGCAGAACTCATGGTCGTCGAAGCCGCAACTGTCCGTACCAGCAAAAGAAAACTTCAAGATGCAGAGTATGTATGCCATGATGCTCTCCACTGATGAGAATCTTGAATCTCCAACTTCCACTCTGTGCTTCCCTGGTGGTGGTAATGGTGCCATGCTTCCTATGATGTCTTCCACAACCACCGCAACCACTACTATGACAGTAGATGTTGTCAACGAGAACTTACTTATGACGAAAACTAATAAGATTGATAGCAACGGAAGCACGGTGAGCCCATGTGACGAAGGAGTGTTCATCACGAAAGGAGGAGGAGGAGGTACTACTGAGTCATCATCATGGTACCTGAACAATAATCCTGAGACAGAAGTTGATGACGATGAAATAGTGGAAAACAATAACAATAACAAAAGCAATAATAAGTTGGGAGATGATGACATCATGGTGGCAGTGGAAGCATTCAGAGGAAGAGGCGGAGGAGGAGGAGGAAGTGGTGGAGGGGGTTACGATGTTGTCCCACCACGAAGCAGCGATGTTGTGGTAATGGAAGCAGGGCTCATAAGCAGCAATAATGGTGACGATGATGGGCACATGACTTACGATACAATCATGAATGATGGTGACGGAAGCATCTGTAACATGAGCCTCGAAGAGAATAAGCATTATTGGAACGCCATACTTAGCTTGGTCAATGATGCTCAACTCATGTTCTAA 1146 0.4747 YLFWTFDEHLLGIRYRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDAMAGGSGAASTSQSKDVANLSHMAQWENARLEAEARLVRESKLLLQAHQAQQTNTTQAQPARLVLNKITAAHQQPMLPPCLDVLKAWQNSWSSKPQLSVPAKENFKMQSMYAMMLSTDENLESPTSTLCFPGGGNGAMLPMMSSTTTATTTMTVDVVNENLLMTKTNKIDSNGSTVSPCDEGVFITKGGGGGTTESSSWYLNNNPETEVDDDEIVENNNNNKSNNKLGDDDIMVAVEAFRGRGGGGGGSGGGGYDVVPPRSSDVVVMEAGLISSNNGDDDGHMTYDTIMNDGDGSICNMSLEENKHYWNAILSLVNDAQLMF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242229g00001 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 44 IPR017930 -
Stsc242229g00001 381 Pfam Myb-like DNA-binding domain 10 40 IPR001005 -
Stsc242229g00001 381 MobiDBLite consensus disorder prediction 48 72 - -
Stsc242229g00001 381 ProSiteProfiles Myb-like domain profile. 11 40 IPR001005 -
Stsc242229g00001 381 SUPERFAMILY Homeodomain-like 4 49 IPR009057 -
Stsc242229g00001 381 CDD SANT 4 40 IPR001005 -
Stsc242229g00001 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 162 - -
Stsc242229g00001 381 Gene3D - 4 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242229g00001 Stsc-Chr242229 118 1263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242229g00001 16 129 MYB Transcription Factor Family AT3G01140 61.739 2.22e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc242229g00001 Myb_DNA-binding 3.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242229g00001 K09422 - gmx:100809025 290.041