Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242228g00001 ATGTCATTTCGTTTAACAAAATTCGATTTCAGCCATTTTCGCTACTTTACGGAGAAGCTGCAGCCGGAGCTGCTCGGCGGCGCGGTTGCTATTATTGCCGTTGGCCTTACCGCCACCTACTTTTACCGTCGGTTTACCAAAGTCCCCAAAAAATGCCTGGACCCGAACAACTTCAAAGAATTTGAACTTATAAAGAAGACCCAACTGAACCATAATTCTGCAAGATTCAAATTTGCCCTTCCAACTGCTAACTCTGTATTGGGCCTTCCAGTCGGAAAAAATATTATTGCCAGGGGAAGAGATAGCTTGGGAGAAGAGGTTATGAGATCATATACTCCAATCACCTTGGATTCCGATGTTGGCTACTTCGAATTAGTTGTTAAGATGTATCCAAATGGAAAGATGTCCCACCATTTTAGACAAATGAAAATTGGAGATAAGTTGGAGGTTAAGGGTCCCAAGGGGCGATTTAGTTACAAGTCTGGTCAAGTTCGGGCATTTGGAATGATTGCTGGAGGTTCAGGCATCACCCCAATGTTTCAGATTACAAGGGCCATACTAGAAAATCCCAAGGATAAAACCAAGATTTTCCTTTTATACGCCAATGTGACTGTTGATGATATTCTATTAAAGGAAGAACTAGATAACTTTGTCAACAAATATCCAAATCAGTTCAAAGTCTATCATGTTCTTAATAAGCCCCCTAACGAGTGGAATGATGGCGTTGGGTACATAACTAAGGATATGATTCAAACCCATTGTCCTGCACCAGCCAAAGATATTCAGATACTGATGTGCGGGCCACCACCCATGAATAATGCAATGACAGCTCATCTTAATGCACTTGGCTACCTACCAAAGATGCAATTCGAGTTTTAG 879 0.4175 MSFRLTKFDFSHFRYFTEKLQPELLGGAVAIIAVGLTATYFYRRFTKVPKKCLDPNNFKEFELIKKTQLNHNSARFKFALPTANSVLGLPVGKNIIARGRDSLGEEVMRSYTPITLDSDVGYFELVVKMYPNGKMSHHFRQMKIGDKLEVKGPKGRFSYKSGQVRAFGMIAGGSGITPMFQITRAILENPKDKTKIFLLYANVTVDDILLKEELDNFVNKYPNQFKVYHVLNKPPNEWNDGVGYITKDMIQTHCPAPAKDIQILMCGPPPMNNAMTAHLNALGYLPKMQFEF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242228g00001 292 Pfam Oxidoreductase NAD-binding domain 169 275 IPR001433 GO:0016491
Stsc242228g00001 292 PANTHER NADH-CYTOCHROME B5 REDUCTASE 48 292 IPR001834 GO:0016491
Stsc242228g00001 292 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 56 160 IPR017927 GO:0016491
Stsc242228g00001 292 FunFam NADH-cytochrome b5 reductase 150 292 - -
Stsc242228g00001 292 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 206 217 IPR001709 GO:0016491
Stsc242228g00001 292 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 168 187 IPR001709 GO:0016491
Stsc242228g00001 292 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 262 270 IPR001709 GO:0016491
Stsc242228g00001 292 Gene3D Translation factors 50 149 - -
Stsc242228g00001 292 SUPERFAMILY Riboflavin synthase domain-like 49 160 IPR017938 -
Stsc242228g00001 292 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 148 284 IPR039261 -
Stsc242228g00001 292 Pfam Oxidoreductase FAD-binding domain 61 159 IPR008333 -
Stsc242228g00001 292 FunFam NADH-cytochrome b5 reductase 51 150 - -
Stsc242228g00001 292 CDD cyt_b5_reduct_like 61 292 - -
Stsc242228g00001 292 Gene3D - 150 292 IPR039261 -
Stsc242228g00001 292 PRINTS Cytochrome B5 reductase signature 109 116 - -
Stsc242228g00001 292 PRINTS Cytochrome B5 reductase signature 145 159 - -
Stsc242228g00001 292 PRINTS Cytochrome B5 reductase signature 168 187 - -
Stsc242228g00001 292 PRINTS Cytochrome B5 reductase signature 206 217 - -
Stsc242228g00001 292 PRINTS Cytochrome B5 reductase signature 262 270 - -
Stsc242228g00001 292 PRINTS Cytochrome B5 reductase signature 87 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242228g00001 Stsc-Chr242228 6022 21680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242228g00001 46 292 NADPH P450 reductases AT5G17770 68.016 1.60e-133 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242228g00001 K00326 - gmx:100784114 453.366