Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242223g00005 ATGATCATGGCACCGGAACATATGAACATAGTCTTTGGCATTCTCATAGTTGGAGCACTCATAATTGCCTTCACATTCTTCAGTTTCACCATGCTTGGATGGTGCAGTCACACTAGTGACATGCCAGTACCCCATCAAGGGCCACCAGGGATATATTTCGACGACAAGTTCTCTGGCTGCGGCGCGAGTTTGGAGTCGCACTCGGTTACCTTCCAGTACAAGTTAGGAGGTGCTGTTGATGGTAGAAGCCAAACAGAGTGTGTTATCTGCTTGGCGCAATTCGAAGAAGAGGAGAGTGTTCGGAAGCTTCACAGTTGCAGGCATATTTTCCACACTTCTTGCATTGATAGGTGGCTCGGCTCTCATACCGGATGCCCCCTATGCCGGAGTCAGATCGACCAATCGGCTTCCCCGAATGGAGCAGCATATTCACAACAAAATAACCATATGATCTTGGTTTCTGTTGATTCCTGA 474 0.481 MIMAPEHMNIVFGILIVGALIIAFTFFSFTMLGWCSHTSDMPVPHQGPPGIYFDDKFSGCGASLESHSVTFQYKLGGAVDGRSQTECVICLAQFEEEESVRKLHSCRHIFHTSCIDRWLGSHTGCPLCRSQIDQSASPNGAAYSQQNNHMILVSVDS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242223g00005 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 137 IPR013083 -
Stsc242223g00005 157 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Stsc242223g00005 157 SUPERFAMILY RING/U-box 82 135 - -
Stsc242223g00005 157 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 134 IPR044675 -
Stsc242223g00005 157 SMART ring_2 87 128 IPR001841 -
Stsc242223g00005 157 Pfam Ring finger domain 86 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242223g00005 Stsc-Chr242223 25375 26349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242223g00005 14 141 C3H Transcription Factor Family AT5G17600 34.752 1.35e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242223g00005 - - adu:107464721 269.626