Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242223g00004 ATGGCATTATTATTCACATATATTATTGGATTTTCTGTTGTCATAATAGGAATTTGTATTCCAATCATTTCAAGATTCGATGGAGAGAAACCCAAACTCCCAGATATTCCTCCTCCATATCCTCCAGAACCATCACCACCAACTCATCAAACAAAGTATGACGTGTTCATCAGCTTCAGTGGCAACGACACTCGAGAAGGCTTGCTCAGCCATCTCACAAAGGCATTATACCAGAAACAAATCGACACCTTCGTTGACACCAGGCTCAAGGAAGGCCAAGACATCTCCCAAGAACTTCTCCGAGCTATTGAGAGGTCACTGATTTCGCTGGTTGTGTTCTCGGAAAGCTATGCTTCTTCGTCTTGGTGCTTGGATGAGTTGGTGAAGATTATGGAGTGTAGAAGAGAACAAGGACAGATTGTTATACCTGTTTTCTACAAAGTGGAGCCGTCCGATGTGAGACATTCAAAGGGTGTGTTTTCTGAAGCATTTGCTAAACAAGAGAAAAGGCATGGTAAGCAAAAGGTGCAAACCTGGAGATCTGCTTTTGGGGAAGCTGCTAATATTTCAGGCCTTCATTATTCTACAAAATTATTCGGGAATGAAGCTGAGCTGATTGAAGCCATCATCCAATTAGTGAACTCTAAGTTGAAAAGCATGCGTCAAGTTTCCACAAAAGGACTTCCTGGAATCGGCAAATCAATTTCTAGTGTGGAATCATTACTCCGCCAACATCCACAGAGCGTCCGTGTTGTTGGAATCTGGGGCATGGGTGGCATTGGAAAGACAACAATCGCAGAAGAAATCTATAACCTTCTCCGTCATGAATTCGAAGCTTCTGTTTTCCTCCGAAACGTAAGGGAAGTCTCACTCCGACGTGGAATAACCTATTTGAAGAATGAACTCTTCTCCAATCTCTTAGGCGAAACTCTCAAGATCGAAACTCAGAGATTGCCAACTTATGTTGAGATGAAAATTGAGCGGATGAAGGTTCTTATTGTTCTTGATGATGTCAACCAGTCAGATCAGTTTGAGATTCTACTCGGAAAGCTGGAATGTTTTGGATCTGGAAGCAGAATTCTTGTAACTACCAGAGATAGACACGTTCTTGGCACATACGATACATACAAGGTTGAACCGTTGGAGCTTGATGAAGCACTTAAGCTTTTCAATTTCATTGTGAATCAAGGCGGCAAGGATTATGCTGTGCTGGCAGAGAAGGTGGTGGATCATGCCAACGGCATTCCAGTGGTTATCAAGAGTCTGGCTCATCTACTTCGCGGCAAAGATAAGCGGATTTGGGAAAGCGAATTGGAGAAGCTTGGCAAGATACCGGATGAGGAGGTTTTTGCTATAATGAGGCTGAGTTATGATGACTTGGATAGTTATCAGAAATCAATACTTTTGGACATTGCATGCTTCTTTGATGGGATGAAGTTGAAGGTGAAGTACTTGGAAAGTTTGTTGAAGCATGGGCATTATCGGGTTCTTGCAGCATTGAAAAGACTTGAAGATTTGTGTTTGATAACCATTTCTAAAGAGGATGTGGTAACAATGCATGACATTGTGCAAGAAATGGCTTGGGAGATTGTTCTCCAGGAATCTATTGAAGACCCTGCCACCCATAGTCGAATATGGAATCCTGACTACATTTATCAAGTACTCAAAAATAATCAGGGGAGTGAGGCCATTAGAAGCCTAAACTTCAGCTATTCCAAAGCAACAGTTAGGAACATGCAGTTTAGCCCTCTTGTATTTTCTAAGATGAGTAAGCTGCGATTTCTTGACTTCTATGGAGAACAAGACCTCTTAAAGTTTCCTGAGGGTCTTCAACAGTTGCCAAGTCGACTAAGATATCTTCGTTGGACTTATTACCCTCTAAATTCATTACCAAAGGAATTTTCTGCAGAGAACCTGGTCATATTAGAATTACCCTATAGTAAAGTGGAAAAGCTTTGGAATGGGATCCAGAATCTTGAGAAACTGAAGGTTCTTAAGGCTCCATATTCCTCACAGTTGAAGGAGTTTCCAGACTTATCAAGGGCCATCAATCTTGAGATATTGGATCTCAAATATTGTCTTCTGTTGACTCGTGTCCATCCGTCTCTCTTCTCCCTCAACAAGCTTGAGACTTTGGATCTAAGCTGGTGCTCTTCACTTACCAAACTTGAAACCAATGCTCACTTCACATCCCTTCGTTATCTGAGTCTCTATCACTGCAAAAGATTGAACAGATTCTCTATGATATCAGAAAACATGACAGAACTTGATTTGCGACACACGTCCATCCGAGAATTGCCATCTGATTGCAAGAATCTTCAAACTCTACCAGAGCTTCCACTCTCCATAGAAACATTAGATGCAGAGAACTGCACATCATTGAAGGCTGTGCTTTTCCCAAATATCAGTGAACAGCTGAAGGAAAACAAGAAAAGGGTTGTGTTCTGGAACTGCTTGAAGTTGGAAAAGCAATCTGTGGAGGCTTTCACATTGAATGCTCTTATCAACATGGTGAGATTTACAAATCAATATTTGTCTGCTGCACTAGAGCATGATAATGTAGACAATTCAAATGAAGACCCTGAAGCCTCTTATGTTTATCCGGGGAGCATTGTTCCAAAGTGGTTTGAGTATCAAACAACAACAGATCACCTAACTGTTAATCTCTCATCTGCTGCATATGCACCCAAATTGGGCTTTATTTTATGCTTCATTGTTCCTGTAGTACCATATGAGGGTTTGAGGTTGATGTTTACAATCAGTGGCGAGGACGACAATGATGGGAACAAAGTCATCAAGTTGAATGTGGACAGACCAAGGAAGGTGATTTCATCGGATCACGTGACTCTATTCTATGATCAACGTTGCAGTAGCTTCCTAAATGGCAGATATAAAGCTCTTGGAGTTTTTAAAATCAAGGTGTCAGTTGTGTCAATATCGATTGCATCAGAGCATGTGGCAGTGGAGTTGAAAGGCTTTGGAGTGCACCCAGTAAACCCATCAAAGTATTCTAGTTTCAAAGAAAACATGGAACTGTGGGGTTATCATACCCCTGTAACTGTGAAGCCGGTTTCATGGTTGAATGGATTTTTGTCGCGGATTATAGGTTAA 3111 0.4147 MALLFTYIIGFSVVIIGICIPIISRFDGEKPKLPDIPPPYPPEPSPPTHQTKYDVFISFSGNDTREGLLSHLTKALYQKQIDTFVDTRLKEGQDISQELLRAIERSLISLVVFSESYASSSWCLDELVKIMECRREQGQIVIPVFYKVEPSDVRHSKGVFSEAFAKQEKRHGKQKVQTWRSAFGEAANISGLHYSTKLFGNEAELIEAIIQLVNSKLKSMRQVSTKGLPGIGKSISSVESLLRQHPQSVRVVGIWGMGGIGKTTIAEEIYNLLRHEFEASVFLRNVREVSLRRGITYLKNELFSNLLGETLKIETQRLPTYVEMKIERMKVLIVLDDVNQSDQFEILLGKLECFGSGSRILVTTRDRHVLGTYDTYKVEPLELDEALKLFNFIVNQGGKDYAVLAEKVVDHANGIPVVIKSLAHLLRGKDKRIWESELEKLGKIPDEEVFAIMRLSYDDLDSYQKSILLDIACFFDGMKLKVKYLESLLKHGHYRVLAALKRLEDLCLITISKEDVVTMHDIVQEMAWEIVLQESIEDPATHSRIWNPDYIYQVLKNNQGSEAIRSLNFSYSKATVRNMQFSPLVFSKMSKLRFLDFYGEQDLLKFPEGLQQLPSRLRYLRWTYYPLNSLPKEFSAENLVILELPYSKVEKLWNGIQNLEKLKVLKAPYSSQLKEFPDLSRAINLEILDLKYCLLLTRVHPSLFSLNKLETLDLSWCSSLTKLETNAHFTSLRYLSLYHCKRLNRFSMISENMTELDLRHTSIRELPSDCKNLQTLPELPLSIETLDAENCTSLKAVLFPNISEQLKENKKRVVFWNCLKLEKQSVEAFTLNALINMVRFTNQYLSAALEHDNVDNSNEDPEASYVYPGSIVPKWFEYQTTTDHLTVNLSSAAYAPKLGFILCFIVPVVPYEGLRLMFTISGEDDNDGNKVIKLNVDRPRKVISSDHVTLFYDQRCSSFLNGRYKALGVFKIKVSVVSISIASEHVAVELKGFGVHPVNPSKYSSFKENMELWGYHTPVTVKPVSWLNGFLSRIIG 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242223g00004 1036 Pfam NB-ARC domain 240 443 IPR002182 GO:0043531
Stsc242223g00004 1036 Pfam TIR domain 52 223 IPR000157 GO:0007165
Stsc242223g00004 1036 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 471 IPR027417 -
Stsc242223g00004 1036 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 53 791 IPR044974 GO:0006952
Stsc242223g00004 1036 FunFam Disease resistance protein (TIR-NBS-LRR class) 49 219 - -
Stsc242223g00004 1036 SUPERFAMILY "Winged helix" DNA-binding domain 448 556 IPR036390 -
Stsc242223g00004 1036 Pfam Leucine Rich Repeat 638 657 IPR011713 -
Stsc242223g00004 1036 Gene3D - 47 223 IPR035897 -
Stsc242223g00004 1036 SUPERFAMILY Toll/Interleukin receptor TIR domain 45 191 IPR035897 -
Stsc242223g00004 1036 ProSiteProfiles Stonin homology domain (SHD) profile. 527 684 IPR012320 GO:0006897
Stsc242223g00004 1036 SMART till_3 52 189 IPR000157 GO:0007165
Stsc242223g00004 1036 Gene3D - 234 377 IPR027417 -
Stsc242223g00004 1036 ProSiteProfiles TIR domain profile. 51 217 IPR000157 GO:0007165
Stsc242223g00004 1036 Pfam C-JID domain 868 957 IPR045344 -
Stsc242223g00004 1036 Gene3D Ribonuclease Inhibitor 498 846 IPR032675 -
Stsc242223g00004 1036 Gene3D - 381 461 IPR042197 -
Stsc242223g00004 1036 PRINTS Disease resistance protein signature 704 720 - -
Stsc242223g00004 1036 PRINTS Disease resistance protein signature 412 426 - -
Stsc242223g00004 1036 PRINTS Disease resistance protein signature 251 266 - -
Stsc242223g00004 1036 PRINTS Disease resistance protein signature 325 339 - -
Stsc242223g00004 1036 SUPERFAMILY L domain-like 579 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242223g00004 Stsc-Chr242223 16697 21350 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242223g00004 39 807 WRKY Transcription Factor Family AT4G12020 32.555 2.09e-100 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242223g00004 - - adu:107464771 1483