Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242218g00002 ATGGTGGTTATGATAATGGGTTCTTTAGGAGGAGAGAAAGGGTGGAAGAAAGGGCCATGGACTCATGAAGAGGATAAGTTGCTCACTGAATATGTCACCTTGCATGGAGAGGGTAGGTGGAGTTCTGTGGCCAAGTTCACAGGTTTAAATAGGAGTGGGAAAAGTTGCAGATTGAGATGGGTGAATTATTTGAGGCCAGGTCTGAAGAAGGGTCACTTAACACCAATGGAAGAAGGAATAATAATTGAATTGCATGCTATTTTGGGCAACAAGTGGTCTACAATAGCAAGGTATTTGCCAGGTAGAACTGATAATGAGATAAAGAACTATTGGAGAACCCACTTCAAAAAGAAAGAGGATTCCAAGCACAATAAGAAGAAGCTAAAAAGGAGAAGATCAAAGGTAATAATGGAGGACACCAACAAAAGTAATAATCATAATAATAATAATAAATCATCCTATGATGATGAGACAAAAGAAAACTACTATGATGATGATCACCACAATAATAATAATAATATGGGGCTAATGTACCCTAATAATAATAACAATCCAACAATGTTATTAGAGCATCAAGAAAGCTTCCCTTTGATGCATCAAGATTATTTCTTATCATCACCTTCATGGCCAGACACTACTACAACAGCAGAAGATTATTATGATGCCTTCTTGTTTAGTTTATGGGACTTTGATGTACCTCTGGGATTTGAAGAACATGTTAACCACCTCACCAAATATGTGCTTCCAAACCAAGCTACTTTTGGGGATGGAGGGAACAACCCATGCAAAAATACTTAG 798 0.3759 MVVMIMGSLGGEKGWKKGPWTHEEDKLLTEYVTLHGEGRWSSVAKFTGLNRSGKSCRLRWVNYLRPGLKKGHLTPMEEGIIIELHAILGNKWSTIARYLPGRTDNEIKNYWRTHFKKKEDSKHNKKKLKRRRSKVIMEDTNKSNNHNNNNKSSYDDETKENYYDDDHHNNNNNMGLMYPNNNNNPTMLLEHQESFPLMHQDYFLSSPSWPDTTTTAEDYYDAFLFSLWDFDVPLGFEEHVNHLTKYVLPNQATFGDGGNNPCKNT 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242218g00002 265 CDD SANT 74 115 IPR001005 -
Stsc242218g00002 265 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Stsc242218g00002 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Stsc242218g00002 265 MobiDBLite consensus disorder prediction 118 132 - -
Stsc242218g00002 265 FunFam Myb transcription factor 17 69 - -
Stsc242218g00002 265 MobiDBLite consensus disorder prediction 152 167 - -
Stsc242218g00002 265 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 11 200 - -
Stsc242218g00002 265 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Stsc242218g00002 265 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Stsc242218g00002 265 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Stsc242218g00002 265 Pfam Myb-like DNA-binding domain 73 114 IPR001005 -
Stsc242218g00002 265 SMART sant 69 117 IPR001005 -
Stsc242218g00002 265 SMART sant 16 66 IPR001005 -
Stsc242218g00002 265 CDD SANT 19 64 IPR001005 -
Stsc242218g00002 265 Gene3D - 16 69 - -
Stsc242218g00002 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Stsc242218g00002 265 MobiDBLite consensus disorder prediction 117 169 - -
Stsc242218g00002 265 Gene3D - 72 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242218g00002 Stsc-Chr242218 15642 17133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242218g00002 14 181 MYB Transcription Factor Family AT3G30210 60.465 1.25e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc242218g00002 Myb_DNA-binding 4.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242218g00002 K09422 - gmx:100785540 273.478