Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242215g00001 ATGAGCAACAGCTTGAAACTAAGATGGTTCATGGATTTTAGTGGAGTTTTGAGGCTTGTGGTGGTGGTGTGTTTGTTGTTACTTCAGAACTTGGGTTTGTGCTTCACTTTGAATGAAGAAGGTAAAGCTCTTTTGAAGTTGAAGGAGAGAATAGTGAGTGACCCTTTTGGTGCTTTGTCAAATTGGCTTGATGATGGAGCAGTTTTTGACCCTTGCAATTGGTTTGGTGTTGAGTGCTCAGATGGAAGAGTAGTTGTCTTGAATTTGAAAGATCTTTGCCTTGGAGGAACTCTTGCACCTGAGCTGCTCAACCTTGTTCACATAAAGTCCATTATTTTGCGGAACAACTCGTTCTCTGGAACCATCCCCGAAGAAATCGAAGAGCTGAAAGAGTTGGAGGTTTTGGATTTGGGATTCAACAACTTCAGTGGAAATATACCTGTTGGTTTTGGGAGTAATACCTCACTGTCAATCCTTTTGTTGGACAACAATGAGTTTCTTGTCAGTTTCAACCCCGAAATCGATGAACTGAAGATGCTCTCAGAAAGTCAAGTAGATAAAAACCAGCTAGTTGATGCAGCTAAAAGGCCTGCTTGTACAAGAAGATCCTTCACATGGCATGTAAATGTTGATCAAAGTAATGGTATTCGGAGTCTACTGCAAAGTCCTAAACCGAATCACCACCGTGTTGGCGAAGATAATTACAATCGTGAATATAATCCACCACTTAGTAGCCCTGCTTCATCACCAGCTCGCTTGCCGGCGGCCTCCCCTAGTGAAAATGCTTCTAATCCTCCTCCTTCCAAGTCTGCACCAGGCTCTGAAGTAGCATCTAAAAGTTCCACTTCGAAGAATCATCGAGCACCGGTTGTGGCTGGAATCATAGGTGGTGTTGCATTCCTTCTTATTACATTCATTGGCATATATCTCTGCAAGATCAACAAGGTAACTAATGTGAGGCCTTGGGCCACAGGACTAAGTGGACAGCTTCAGAAGGCATTTGTGACCGGTGTGCCAAAGCTAAAGAGAACAGAGATTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGTACTTCACCCATTGGCACAATGTATAAAGGGACTTTGTCTAGTGGTGTTGAAATAGCAGTTGCTTCTGTTTCGGTAACATCATCAAAGGATTGGTCAAGAACTTTAGAAGCACAGTTTAGAAAGAAGATAGATATGCTATCCAAAGTGAACCATAGGAATTTTGTCAATCTTATTGGATTTTGTGATGAAGAGGAGCCTTTCACCAGAATGATGGTTTTCGAATACGCCCCGAATGGAACACTATTTGAGCATTTACATATAAAAGAAGCTGAGCACTTGGACTGGCCAACAAGGCTTAGAATCGCGACCGGAACAGCTTACTGCCTACAATATTTACACCAGTTGGACCCTTCTATGACTCTTACCAACCTGAATTCTTCAGTTGTCCATCTAACCGAGGACAACGCGGCGAAAATCTCAGATTTTAGTTTCTCATACGAAACGGCTTCGGCTGAGACAAAATCTTGGGGCAAAAAACACATTGACATACCACCAGCAACACTTGAGAGCAATGTTCATAGCTTTGGTATCATGCTACTAGAACTGGTAACAGGAAGGCCTTGTTATTCTGTGGACAATATTAATGGCTTGATTGAGAATTGGGCAACACACTATGTTGAAGGTGAGAAACCCCTCAAAGAAGTGGTTGATCCAACACTAGCATCTTACCAAGAGGATCAGGTAGAACAAGTTGCTGCATTGATCAAATATTGTTGCAATCCTGAATCAGAGAAGAGGCCAACAATGAAAGAAGTGAGTGTGAGGTTGAGAGAGATAACAAAACTAGCACCTGAAGCAGCAGTTCCAAGGCTTTCTCCACTTTGGTGGGCTGAACTCGAGATTTCTAATGCAGATGCAATATGA 1938 0.4231 MSNSLKLRWFMDFSGVLRLVVVVCLLLLQNLGLCFTLNEEGKALLKLKERIVSDPFGALSNWLDDGAVFDPCNWFGVECSDGRVVVLNLKDLCLGGTLAPELLNLVHIKSIILRNNSFSGTIPEEIEELKELEVLDLGFNNFSGNIPVGFGSNTSLSILLLDNNEFLVSFNPEIDELKMLSESQVDKNQLVDAAKRPACTRRSFTWHVNVDQSNGIRSLLQSPKPNHHRVGEDNYNREYNPPLSSPASSPARLPAASPSENASNPPPSKSAPGSEVASKSSTSKNHRAPVVAGIIGGVAFLLITFIGIYLCKINKVTNVRPWATGLSGQLQKAFVTGVPKLKRTEIEAACEDFSNVIGTSPIGTMYKGTLSSGVEIAVASVSVTSSKDWSRTLEAQFRKKIDMLSKVNHRNFVNLIGFCDEEEPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWPTRLRIATGTAYCLQYLHQLDPSMTLTNLNSSVVHLTEDNAAKISDFSFSYETASAETKSWGKKHIDIPPATLESNVHSFGIMLLELVTGRPCYSVDNINGLIENWATHYVEGEKPLKEVVDPTLASYQEDQVEQVAALIKYCCNPESEKRPTMKEVSVRLREITKLAPEAAVPRLSPLWWAELEISNADAI 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242215g00001 645 ProSiteProfiles Protein kinase domain profile. 351 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242215g00001 645 PANTHER PROTEIN MALE DISCOVERER 2 18 640 - -
Stsc242215g00001 645 Gene3D Ribonuclease Inhibitor 36 222 IPR032675 -
Stsc242215g00001 645 FunFam Inactive receptor-like serine/threonine-protein kinase 325 433 - -
Stsc242215g00001 645 Pfam Protein tyrosine and serine/threonine kinase 354 612 IPR001245 GO:0004672|GO:0006468
Stsc242215g00001 645 FunFam Nuclear pore complex protein NUP107 37 195 - -
Stsc242215g00001 645 Gene3D Transferase(Phosphotransferase) domain 1 434 625 - -
Stsc242215g00001 645 MobiDBLite consensus disorder prediction 217 283 - -
Stsc242215g00001 645 SUPERFAMILY Protein kinase-like (PK-like) 335 613 IPR011009 -
Stsc242215g00001 645 MobiDBLite consensus disorder prediction 238 283 - -
Stsc242215g00001 645 SUPERFAMILY L domain-like 37 192 - -
Stsc242215g00001 645 Gene3D Phosphorylase Kinase; domain 1 324 433 - -
Stsc242215g00001 645 Pfam Leucine rich repeat N-terminal domain 38 80 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242215g00001 Stsc-Chr242215 4232 7259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242215g00001 8 623 Receptor kinase-like Gene Family AT5G16000 26.730 1.35e-51 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Stsc242215g00001 PK_Tyr_Ser-Thr 8.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242215g00001 - - gmx:100820416 798.119