Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242212g00005 ATGGAGGGTGTGCCTAAATTGACACAAGGGACCGTTGTTCCCGCCATGGTTATGGCTCCATTCAAGGAGGAGCAGCCTCAGCCACCGCCCATCGACCACGCCAAGACCCTCATCTGTGCCCTCAACTTCCTCTCACGTGATCTCCCTCTCCCTCCTCACCTCCTCACCTCCGTTTCTACCATCTATCACGACCACCCTTCTTCGCTCAACAACCTCCAAGAAGATATAGGGAATTCTAGTGAAAATTTAATTACAGACCTTGAAGGTGCATTGCTTAAGCAACGGCCAGATGGTGTGTTGGGTTCCAAATTGGAGAAAGCAAGGGAAAGCCGTTATCAAAATCGGATACAGAACCGATTAACTGAACTTGAAGGATTGCCTTCAACAAGGGGAGAGGACTTGCAAACTAAGTGCCTGCTTGAATTTTATGGTCTAAAGCTAGGAGAGTTGCATTCGAAGGTTCGGTCTGAAGTGAGTTCTGAGTACTGGCTGAATGTTAAATGTGCATACCCCGACAGGCAATTGTTTGATTGGGGCATGATGAGATTGCAGCGTCCACTATATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAAATAAGGAAGAAAAGGGATGCTGAGAGACTATGTAGATTAGAAGAGGAGGAAAAAACTCATATAGAGACTAGAAAAAGAAAATTTTTTGCAGAAATACTCAATACTGTCCGTGAGTTTCAATTGCAAATTCAAGCTGCTGTGAAGCGGAGAAAACAGAGGAATGATGGTATTCAGGCATGGCATGGAAGGCAAAGACAACGCGCCACACGGGCTGAGAAATTGAGATTCCAAGCCTTAAAAGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGCAAGAATGAAAGATTAACCACGCTTCTTGAAGAAACCAATAAACTACTAGTGAATTTAGGAGCTGCTGTTCAACGTCAAAAGGACTCCAAACATTCAGATGGTATTGAACCCTTGGAAGATTCAGAAGTTGATTTACCTGAGTCAGATGCTTCCAAGAATGAAAAGGAATCACCTCTTGATGAAGATTTGGATATGATAGATTCTGATCATAATGGTGATACTAATGATTTACTCGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCATCTATTCTTCAAGGTGGAGAATTAAGACCATATCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTGAATGGGATTTTGGCTGATGAAATGGGTCTTGGGAAGACAATACAAACAATTTCATTAATAGCACATCTTATGGAGCACAAGGGTGTTACTGGTCCCCACTTGATTGTTGCTCCGAAGGCTGTTCTGCCAAATTGGATGAATGAATTCTCAACATGGGTTCCAAGGTATGCGCTGGAAGACTATAGATTATTCCATTCCCTGCTCTCCTGGTGGGGAGAGGGGAGTGAAATCGCTAAAATTCACTGGGTCTACCTGATTGTGGATGAAGGACATCGGTTGAAGAATCATGAATCTGCTCTAGCAAGGACGCTGGAAGCCGGCTATCACATTCAACGCAGACTTCTGTTAACTGGCACCCCAATTCAAAACAGCTTGCAGGAGTTGTGGTCCCTGCTAAATTTCCTCCTTCCAAACATTTTCAACTCTGTTCAGAACTTCGAGGACTGGTTTAATGCCCCTTTTGCAGATCGAGTTGATGTCTCTTTAACAGATGAAGAACAACTTTTGATTATTCGACGTCTACATCAAGTAAATTTCTCTTCCAGTTTATATTTCTCTTTCTTTTTGCGCCTTGATTCTGAAGTTTTTCTTTGA 1857 0.4281 MEGVPKLTQGTVVPAMVMAPFKEEQPQPPPIDHAKTLICALNFLSRDLPLPPHLLTSVSTIYHDHPSSLNNLQEDIGNSSENLITDLEGALLKQRPDGVLGSKLEKARESRYQNRIQNRLTELEGLPSTRGEDLQTKCLLEFYGLKLGELHSKVRSEVSSEYWLNVKCAYPDRQLFDWGMMRLQRPLYGVGDPFAMDADDQIRKKRDAERLCRLEEEEKTHIETRKRKFFAEILNTVREFQLQIQAAVKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKHSDGIEPLEDSEVDLPESDASKNEKESPLDEDLDMIDSDHNGDTNDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEHKGVTGPHLIVAPKAVLPNWMNEFSTWVPRYALEDYRLFHSLLSWWGEGSEIAKIHWVYLIVDEGHRLKNHESALARTLEAGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVNFSSSLYFSFFLRLDSEVFL 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242212g00005 618 MobiDBLite consensus disorder prediction 321 367 - -
Stsc242212g00005 618 MobiDBLite consensus disorder prediction 340 367 - -
Stsc242212g00005 618 Coils Coil 198 218 - -
Stsc242212g00005 618 Gene3D - 490 605 IPR038718 -
Stsc242212g00005 618 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 414 559 IPR014001 -
Stsc242212g00005 618 PANTHER SNF2/RAD54 HELICASE FAMILY 197 598 - -
Stsc242212g00005 618 SMART ultradead3 398 570 IPR014001 -
Stsc242212g00005 618 Gene3D - 371 488 IPR038718 -
Stsc242212g00005 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 597 IPR027417 -
Stsc242212g00005 618 Pfam SNF2-related domain 405 482 IPR000330 GO:0005524|GO:0140658
Stsc242212g00005 618 Pfam SNF2-related domain 497 596 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242212g00005 Stsc-Chr242212 6659 12836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242212g00005 402 563 RAD5 or RAD16-like Gene Family AT1G02670 33.668 5.88e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc242212g00005 SNF2_N 5.2e-41 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242212g00005 - - gmx:100796912 919.457