Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242212g00004 ATGGAAAACTATGTAGGTTCTGGAAAATCAAAGAGTCTGCAGAACTTAACAATGCAACTCAGAAAGTGTTGCAACCATCCATACCTCTTTGTGGGAGATTATGATATGTATAACCGTAAGGAGGAGATTGTCAGAGCATCAGGCAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCGGGCCACAGGGTCCTCCTTTTTTCTCAAATGACTAGACTCATGGATATTCTTGAAATTTATTTGAGGCTTCATGATTTTAAGTATCTAAGACTTGATGGCTCAACAAAAACGGAGGAAAGAGGCAGTCTATTACGAAAATTCAATGCTCCTGACTCCCCATACTTCATGTTTCTCTTAAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATATTTGATAGTGATTGGAACCCCCAAATGGATCAACAAGCAGAGGATCGAGCACATCGCATTGGTCAAAAGAAAGAAGTTAGGGTATTCGTGTTGGTTAGCGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCGAAAGTCATCCAGGCAGGACTTTTCAACACAACATCAACAGCCCAGGATAGAAGAGAAATGCTAGAGGAGATTATGCGTAGAGGTACAAGTTCTCTTGGGACAGATGTACCCAGTGAGAGAGAAATTAACCGCCTCGCAGCTCGATCAGATGAGGAATTTTGGCTATTTGAAAAAATGGATGAAGAGAGAAGACTAAAGGAAAATTACAGATCTCGTTTAATGGACGAGCACGAATTGCCAGATTGGGTGTACTCTCCCCTTCATAACAAGGATGAAAAGGCCAAAGATTTCATCAATGGCAGTGCTACTGGAAAGCGGAAAAGAAAAGAAGTTGTGTATGCAGATACATTAAGTGATGTTCAATGGATGAAGGCCGTGGAGAATGGGGATCTATCAAGGCTTTCGGTAAGGGGGAAGAGAAGAGAGCACCTCTCATCTGAAAACGCGGCGCAAGCCAGCGATAATTCAGGGGCTGAAGAAAGGTTCTCGGAACTCCACACTGAAAGTTTCAACATGGCAAATGACAGAACAAGTGAAGATAGTTTCCATGTGATCCCTGCCTCCAAGAAACCCAAGCTTGAAGGAGCAAATTCCCATAGACATGCATACGAGGATGTCAAAGGAAATGGCTTGAACCAGCATGTGTTATCCTGGAATACTCACAGAAAGAAGAGGTCAAGCTATGGTCAGGGTTCATCATCTGATACAAAAGGGCAGAGTTCAAATGGAAGAGCGAGCTGGAACTGA 1329 0.4304 MENYVGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRLKENYRSRLMDEHELPDWVYSPLHNKDEKAKDFINGSATGKRKRKEVVYADTLSDVQWMKAVENGDLSRLSVRGKRREHLSSENAAQASDNSGAEERFSELHTESFNMANDRTSEDSFHVIPASKKPKLEGANSHRHAYEDVKGNGLNQHVLSWNTHRKKRSSYGQGSSSDTKGQSSNGRASWN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242212g00004 442 MobiDBLite consensus disorder prediction 382 442 - -
Stsc242212g00004 442 Gene3D - 2 266 IPR027417 -
Stsc242212g00004 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 219 IPR027417 -
Stsc242212g00004 442 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 52 219 IPR001650 -
Stsc242212g00004 442 Pfam Helicase conserved C-terminal domain 49 162 IPR001650 -
Stsc242212g00004 442 Pfam Snf2-ATP coupling, chromatin remodelling complex 257 317 IPR029295 GO:0042393
Stsc242212g00004 442 FunFam Probable ATP-dependent DNA helicase CHR12 2 268 - -
Stsc242212g00004 442 CDD SF2_C_SNF 40 173 - -
Stsc242212g00004 442 SMART helicmild6 78 162 IPR001650 -
Stsc242212g00004 442 SMART SnAC_2 255 317 IPR029295 GO:0042393
Stsc242212g00004 442 MobiDBLite consensus disorder prediction 336 356 - -
Stsc242212g00004 442 PANTHER SNF2/RAD54 HELICASE FAMILY 6 353 - -
Stsc242212g00004 442 MobiDBLite consensus disorder prediction 382 401 - -
Stsc242212g00004 442 MobiDBLite consensus disorder prediction 406 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242212g00004 Stsc-Chr242212 4498 6120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242212g00004 47 190 RAD5 or RAD16-like Gene Family AT5G22750 37.671 5.52e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242212g00004 - - gmx:100786280 749.584