Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242209g00002 ATGTTGGCAAAGGAGCATGGCTTGAACCTCAAGGAGACTGAGCTCTGCCTTGGCTTGCCAGGGGGAGGCGGCGGAGGCGAGGCAGCAGCCGAAACTCTGAGGACCACCGGGAAGAGAGGCTTCTCTGAAACTGTTGACCTGAAGCTTAACCTTCAAGGCAATGATAATAACAAGGAAGATCTGGATGAGAATCTGAAGAATGTTCCAAAGGAGAAGACCCTCCTTAAGGACCCTGCCAAGCCACCAGCTAAGGCTCAAGTAGTTGGATGGCCACCAGTGAGGTCATACAGAAAGAACATGATGGCACAAAAGGTGAGCACTGAGGAGAATAAGAGCGGCAGCGCCACCACTGAGAAGACAGCAAGCAGCGCCGCCGCAGCCACTGCAGCTTCCGGTGGTTCATTTGTGAAGGTGTCCATGGATGGAGCTCCTTACCTTCGTAAGGTTGACTTGACAATGTACAAAAGCTACCAAGACTTATCTGATGCCCTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGTCCCAAGGGATGATTGATTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGGGTCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCAATTGGGCTTGCGCCAAGGGCCATGGAGAAATGCAAAAGCAGAAGCTGA 756 0.504 MLAKEHGLNLKETELCLGLPGGGGGGEAAAETLRTTGKRGFSETVDLKLNLQGNDNNKEDLDENLKNVPKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVSTEENKSGSATTEKTASSAAAATAASGGSFVKVSMDGAPYLRKVDLTMYKSYQDLSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKSRS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242209g00002 251 Gene3D - 128 245 - -
Stsc242209g00002 251 Pfam AUX/IAA family 13 242 IPR033389 -
Stsc242209g00002 251 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 238 IPR003311 GO:0005634|GO:0006355
Stsc242209g00002 251 SUPERFAMILY CAD & PB1 domains 128 232 - -
Stsc242209g00002 251 ProSiteProfiles PB1 domain profile. 133 233 IPR000270 GO:0005515
Stsc242209g00002 251 FunFam Auxin-responsive protein 128 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242209g00002 Stsc-Chr242209 20970 23703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242209g00002 107 241 B3 DNA Binding Superfamily AT4G23980 30.370 2.54e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc242209g00002 AUX_IAA 5.4e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242209g00002 K14484 - gmx:547949 369.392