Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242209g00001 ATGGATGCAGCAGATATCAAGAACCTTAAGGCAACAGAACTGAGATTGGGTTTGCCTGGGACTCATCTTGAAGAGAATAATGTTATTTCTGAAGAAAAATCATCATCATCATTAACACCAGTTCTTAACAACAACAAGAGGCCACTGCAATTGCCTGCTGATGAAGAAACTTCTCCTGCTAATAAGGACTCTGGATCTAAGTGCTCTAATAAGAACTCAGATGATGATGCTGCACCCCCACCTTCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCATACAGGAAGAACAGCCTTCAGGAACAATCTGAGGCTGCTGGTGGGATCTATGTGAAGGTCAGCATGGATGGAGCACCTTACCTCAGAAAGATTGATTTGAAGGTCTATGGAGGCTATCCACAACTCCTCAAAGCCCTTGAAAACATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAAGGAAGGGTATAAGGGATCTGATTATGCACCTACATATGAGGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCATGCAAGAGGCTAAGAATCATGAAAGGATCTGAAGCCAGAGGTTTGGGTTGTGCTGTATGA 621 0.4412 MDAADIKNLKATELRLGLPGTHLEENNVISEEKSSSSLTPVLNNNKRPLQLPADEETSPANKDSGSKCSNKNSDDDAAPPPSKAKIVGWPPIRSYRKNSLQEQSEAAGGIYVKVSMDGAPYLRKIDLKVYGGYPQLLKALENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCAV 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242209g00001 206 ProSiteProfiles PB1 domain profile. 109 196 IPR000270 GO:0005515
Stsc242209g00001 206 Pfam AUX/IAA family 11 203 IPR033389 -
Stsc242209g00001 206 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 200 IPR003311 GO:0005634|GO:0006355
Stsc242209g00001 206 MobiDBLite consensus disorder prediction 57 76 - -
Stsc242209g00001 206 FunFam Auxin-responsive protein 104 206 - -
Stsc242209g00001 206 Gene3D - 104 206 - -
Stsc242209g00001 206 MobiDBLite consensus disorder prediction 30 46 - -
Stsc242209g00001 206 SUPERFAMILY CAD & PB1 domains 105 195 - -
Stsc242209g00001 206 MobiDBLite consensus disorder prediction 17 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242209g00001 Stsc-Chr242209 1133 2209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242209g00001 98 202 B3 DNA Binding Superfamily AT2G46530 35.849 7.53e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc242209g00001 AUX_IAA 2e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242209g00001 K14484 - gmx:100527777 271.937